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Detailed information on CNT30727933


BLAST search results

BLAST vs Swiss-Prot:
sp|O49079|PSBO_FRIAG, E-value = 2e-98

BLAST vs NONCODE:
NONGMAT000837, E-value = 4e-68

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30535986Corchorus capsularisEucalyptus grandis20.241.2682.12302forward
CNT30700663Corchorus capsularisQuercus lobata22.7464.1588.53340forward
CNT30277684Corchorus capsularisChenopodium quinoa31.6452.7983.3473forward
CNT30379569Corchorus capsularisManihot esculenta35.2559.8286.72527forward
CNT30711968Corchorus capsularisGlycine max29.4360.9483.64440forward
CNT3091587Corchorus capsularisSolanum tuberosum20.3382.3883.55304forward
CNT30567882Corchorus capsularisActinidia chinensis31.7122.986.08474forward
CNT3086112Corchorus capsularisVigna radiata27.0265.5883.42404forward
CNT30508746Corchorus capsularisSolanum lycopersicum30.0354.2383.52449forward
CNT30147296Corchorus capsularisMedicago truncatula31.7783.1982.95475forward
CNT30597992Corchorus capsularisFraxinus excelsior15.0564.4784225forward
CNT30207216Corchorus capsularisHelianthus annuus22.2160.9280.42332forward
CNT30718209Corchorus capsularisMalus domestica golden28.6331.882.71428forward
CNT30626592Corchorus capsularisDaucus carota27.2246.283.78407forward
CNT30355286Corchorus capsularisLactuca sativa21.252.2283.6317forward
CNT30408540Corchorus capsularisPapaver somniferum21.5475.5981.37322forward
CNT30571041Corchorus capsularisVitis vinifera13.3855.183.5200forward
CNT3023343Corchorus capsularisPopulus trichocarpa18.8638.0187.59282forward
CNT30121175Corchorus capsularisCitrus clementina12.3740.5788.11185forward
CNT30724288Corchorus capsularisLupinus angustifolius27.5635.9586.65412forward
CNT3051042Corchorus capsularisCucumis sativus26.0971.5681.03390forward

Expression of CNT30727933

Peptides detected in this lncRNA

>peptide 1 (32 aa)
MSLVFWNSGGEFLLTPSALTVKEVGSKQNFLA*

>peptide 2 (37 aa)
MLWEDLSWTELVLDGTAPTLVGCIKVAAACSEAAMGFV

Sequence

>CNT30727933
CTGAAATGGAAGTTCATTGATTTAATAAGCAAAAGAAGAACTAGGGGAATTATTCATTAACATGGGAACTTGATCACTTTTTCAAGTTTGGGAGTTTGAT
TTGATCAATTTTTATTACAAGATCAAAGACCAGTTTAACTAGGAGCTATGAAAATGATCATTAGAGGAAGGCAACATAATAATATACAAAGAGAAGGATA
ATATAATCTCAGTGTTTCTCATTGAGTTACAGCAAAGTTTAGCAACACCTTCAAATTACAAAATCTGCAGCAAGAATAAACACATTTGAGACACAAGACC
CTCTCTATTGTTCAAGCTGAGCATACCAGATACCAGTGATCTTAACATCCTTTGGTGTCTTGGCACCCAAGTCAGTGTCAGAAGGCTGAACACTCTCAAA
CACACCAATTACTTCTCCGGTGTCGGTTCTTCCTCATCTCCTCTTCCTCCAGCTGGCAAGGCAACTGCATTGTCATAACCGGTCGAACCACCTCTGCCCT
TTGGGTCCAAGAAAGATGAACCACGGTATGATGGCACAAGGAAGTCTCCACCAAAGCTCTCAGGTTTGCCTGATGCAACCAATTGCTTGATGGTGAAAAG
GAAAGGCACACGTTCACCACCAGGAAGCTGAACTGTCACTGCGGCGTAATCAATCCCATCTTTCTCCTCAAATTTGACAGTGCCATCAGGTGAGACTTCG
AAAGGTCCCTCGATTTCATCAAGGGTGTAGGTTAGACGGGTCATGAGCTTGGTTTTTTGGAACTCTGGAGGGGAATTCTTGTTAACACCCTCTGCCTTGA
CAGTGAAGGAAGTGGGCTCTAAGCAGAACTTCTTGGCGTAGTATTTGCCTGGCTTGAAGGCAAATTTGTCAACACCACCTTCAATGGTTGGGCACTGGTT
AGCCTCTTTGGAACTCCTTCAGCGCTTGCCCCCTTCACAAGAAAACCGAGTAATTTGTGTTACATAATGATCCAATCATAAACTAATCAACTCTTCCTTA
ACAATATTTAACTGTTTTTCTTCAGTAACTAATTCACTATATATGCAAGCAGCCATGGACCTACTGAAAACTTTCTATCAACAATCATAAAAAGCTCATA
TTCGCAAAGATCAACCTTTTCTTTTCTCTTAAGATACCCTACCTAATCTATCAATATCATAGATATAATAACAAAGCATCCATGCAAAAGAATTAACCCA
TTTCAAATCAAGAGCAGAAATTATGAACAAAACCCATACCGAGACCACAAGAGCAGAAGTAGCAAGAGCAAAACCAGCAATCTTGGTAGCATCAGCACAC
TTTTGAGCAAACTCCTTAAGGTCATTTTGCAAAGAGCAAGTGATCCTACCACCGGAAGACTCGACACCAAAGGCCTTAGAAATGCTCTGGGAAGACCTGA
GTTGGACGGAGCTGGTCCTTGATGGCACAGCACCAACCTTGGTTGGTTGCATCAAGGTTGCTGCTGCTTGTAGTGAGGCTGCCATGGGTTTTGTT