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Detailed information on CNT30626592


BLAST search results

BLAST vs Swiss-Prot:
sp|Q40459|PSBO_TOBAC, E-value = 1e-152

BLAST vs NONCODE:
NONTCAT000011, E-value = 3e-95

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30674637Daucus carotaSetaria viridis7.7230.7788.2468forward
CNT30535986Daucus carotaEucalyptus grandis34.6241.6780305forward
CNT30317789Daucus carotaCorylus avellana18.580.383.44163forward
CNT30546556Daucus carotaIpomoea triloba26.6719.6782.55235forward
CNT30515361Daucus carotaJuglans regia22.745.2584.5200forward
CNT30700663Daucus carotaQuercus lobata38.3763.7781.66338forward
CNT30378380Daucus carotaArabidopsis thaliana28.0450.182.19247forward
CNT30277684Daucus carotaChenopodium quinoa67.0865.9682.06591forward
CNT30727933Daucus carotaCorchorus capsularis46.227.2283.78407forward
CNT30379731Daucus carotaManihot esculenta62.5449.6480.22551forward
CNT30524993Daucus carotaPhaseolus vulgaris40.7531.380.22359forward
CNT30710612Daucus carotaGlycine max43.1336.8280.79380forward
CNT3042430Daucus carotaPrunus dulcis3729.9483.44326forward
CNT3091587Daucus carotaSolanum tuberosum35.1984.0184.52310forward
CNT30221336Daucus carotaHordeum vulgare19.9825.4780.68176forward
CNT30567881Daucus carotaActinidia chinensis66.8630.5379.8589forward
CNT3086209Daucus carotaVigna radiata45.1827.9579.9398forward
CNT30542247Daucus carotaBrassica napus27.4740.683.47242forward
CNT30238377Daucus carotaBrassica oleracea27.1344.5182.85239forward
CNT30147296Daucus carotaMedicago truncatula36.6656.5781.73323forward
CNT30242448Daucus carotaAvena sativa12.8321.282.3113forward
CNT30264716Daucus carotaBrassica rapa26.7913.1383.05236forward
CNT30597992Daucus carotaFraxinus excelsior23.0458.1785.71203forward
CNT309111Daucus carotaZea mays2125.280185forward
CNT30607994Daucus carotaGossypium raimondii27.728.1182.38244forward
CNT30207216Daucus carotaHelianthus annuus40.365.1481.41355forward
CNT30718209Daucus carotaMalus domestica golden5837.9684.15511forward
CNT30342715Daucus carotaEragrostis tef37.3436.678.12329forward
CNT30477612Daucus carotaArabidopsis halleri17.9331.7384.18158forward
CNT30368337Daucus carotaSorghum bicolor2127.8280.54185forward
CNT30621504Daucus carotaCajanus cajan27.3615.2979.25241forward
CNT30356664Daucus carotaLactuca sativa37.2364.9582.93328forward
CNT30408540Daucus carotaPapaver somniferum37.3477.2379.94329forward
CNT30571041Daucus carotaVitis vinifera22.3654.2784.26197forward
CNT30704492Daucus carotaPrunus avium44.2741.5383.59390forward
CNT3023343Daucus carotaPopulus trichocarpa35.4142.0581.73312forward
CNT30319039Daucus carotaAsparagus officinalis6.72588.1459forward
CNT30121175Daucus carotaCitrus clementina27.9253.9580.08246forward
CNT3036059Daucus carotaCucumis melo28.4941.0182.47251forward
CNT30584058Daucus carotaEchinochloa crusgalli2114.6180.54185forward
CNT30724288Daucus carotaLupinus angustifolius62.247.8278.65548forward
CNT3066249Daucus carotaSelaginella moellendorffii25.0939.6879.19221forward
CNT3051042Daucus carotaCucumis sativus41.7767.5281.25368forward
CNT30115348Daucus carotaEutrema salsugineum19.1825.0779.88169forward

Expression of CNT30626592

Peptides detected in this lncRNA

>peptide 1 (43 aa)
MQLHCHNRWNHLGPLGQGRRSLCKMARETLLKSHPVCQMLQAA*

Sequence

>CNT30626592
AGGCTTGTAAAATCCTTGCATGTCACATTATATGAAAATTACATAACAATATATACAAGCAAGATAGTACTCGAAAGCTCTTAGGATCATATTGATGTTC
ATAGTCAAAGACATCTTTTACTTCATAAAAAAAAGCTGAACCAAGAAAGAAGATATATTGATTCTCAGAAGACCCTATGATTCAAGTTGCGCGTACCAGA
CGCCTTGAATTTTAACATCCTTTGGAACCTTGGCTCCCAAATCGGTATCAGATGGCTTTGTACCAGTCACAGTAAAGGTGATCTTCCCTGTTGAAGAGGC
CGTGTTCTTAGTATTTTCCTTTGCTAGCTCCTCCTCGTCTCCTCTCCCTCCAGCTGGCAATGCAACTGCATTGTCATAACCGGTGGAACCACCTCGGCCC
TTTGGGTCAAGGAAGGAGGAGCCTCTGTAAGATGGCACGAGAAACTCTCCTGAAAAGCCATCCGGTTTGCCAGATGCTACAAGCTGCTTGATGGTGAAAA
GGAACGGCACACGCTCCCCTCCTGGAAGCTGGACTGTAACAGCAGCATAATCAATTCCGTCTTTCTCCTCAAATTTGATGGTGCCATCTGATGCCACTTC
AAAAGGTCCCTCAATCTCGTCAAGGGTGTAGGTTAGTCGGGTCATGAGCTTGGTCTTTTGAAACTCTGGTGGGGCATTTTTGCCCACAGTCTCAGCCTTA
ACAGTGAATGATGTTGGCTCTAAGCAGAATTTCTTGGCATTGTACTTTCCGGGCTTGACAGCGAAGGTTTCAGTTCCACCGTCAATTGTTGGGCACTGGT
TGGCAGTTCCGGTTCCTTTCACTTCCATGTATGTCTTACTTTGGATCTCATCATAAGTTAGCCGCTTGGGAACACCTTCAG