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Detailed information on CNT30557822


BLAST search results

BLAST vs Swiss-Prot:
sp|P83504|PSBO_BRACM, E-value = 4e-15

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30674885Panicum halliiSetaria viridis26.2251.498.36183forward
CNT30317789Panicum halliiCorylus avellana25.3687.1981.36177forward
CNT30700663Panicum halliiQuercus lobata18.0523.7783.33126forward
CNT30179447Panicum halliiSecale cereale35.6724.8893.17249forward
CNT30290038Panicum halliiTriticum aestivum40.1134.1593.57280forward
CNT30221247Panicum halliiHordeum vulgare18.7724.5893.13131forward
CNT30386646Panicum halliiTriticum turgidum33.6717.8394.04235forward
CNT30592119Panicum halliiMusa acuminata20.6315.9588.19144forward
CNT30436215Panicum halliiAegilops tauschii48.2859.0293.18337forward
CNT30244672Panicum halliiAvena sativa36.5334.3289.8255forward
CNT30659651Panicum halliiTriticum dicoccoides39.9733.2593.55279forward
CNT30264716Panicum halliiBrassica rapa35.2413.6880.08246forward
CNT3010265Panicum halliiZea mays37.9736.7596.23265forward
CNT30607994Panicum halliiGossypium raimondii32.3826.0480.09226forward
CNT30681606Panicum halliiTriticum urartu41.2634.291.67288forward
CNT30342705Panicum halliiEragrostis tef47.4269.5494.26331forward
CNT30477612Panicum halliiArabidopsis halleri31.3843.9880.37219forward
CNT30621504Panicum halliiCajanus cajan31.2313.8380.73218forward
CNT30571041Panicum halliiVitis vinifera21.4941.3280.67150forward
CNT3023343Panicum halliiPopulus trichocarpa24.7923.3279.19173forward
CNT30579974Panicum halliiEchinochloa crusgalli38.8338.2296.31271forward
CNT30497590Panicum halliiDigitaria exilis41.1232.6183.62287forward

Expression of CNT30557822

Peptides detected in this lncRNA

>peptide 1 (73 aa)
MREHKKEETHAKIKNQQPVFALIGTQCRLLCSQKFFHRTPCPWITVASSKIRAARTRSPGSSHPWAPWPRGCR*

>peptide 2 (70 aa)
MSLVFWNSGGAFLAMPSALTVKDVGSRQNFFIWYLPALKGKESTPPSMVGHWFAVPVPFTSMYVLLWISS*

>peptide 3 (42 aa)
MGRIYVGRQTKAHIYTDTHIYTRQPSPLSSCPNAKQALHGSS*

Sequence

>CNT30557822
AGGCTATTAAGTGGGCCTCCTGAAGAATGCAGCCCCCTATTTGTCTCTTAATTATTTCTGCAAGATGTAAAGAGACACAGCATGGGAAGAATATATGTAG
GGCGGCAAACTAAGGCACACATATACACTGATACACACATATATACTAGGCAGCCGTCCCCTCTCTCCTCTTGTCCAAATGCAAAGCAAGCATTACATGG
GAGTTCATGAGAGAACACAAGAAAGAAGAAACGCATGCTAAAATAAAAAATCAACAGCCAGTATTTGCATTAATAGGTACACAATGCCGCCTCCTTTGCT
CTCAAAAGTTTTTTCATCGTACACCTTGCCCATGGATCACGGTCGCGTCGTCTAAGATTCGAGCTGCGCGTACCAGATCCCCTGGATCTTCACATCCTTG
GGCGCCTTGGCCCCGAGGGTGTAGGTGAGGCGGGTCATGAGCTTGGTCTTCTGGAACTCGGGCGGCGCGTTCTTGGCGATGCCCTCGGCCTTGACGGTGA
AGGACGTCGGCTCCAGGCAGAACTTCTTCATCTGGTACTTGCCGGCCTTGAAGGGGAAGGAGTCGACGCCGCCGTCGATGGTCGGGCACTGGTTCGCCGT
GCCGGTCCCCTTCACCTCCATGTACGTCTTGCTCTGGATCTCGTCGTAGGTCAGCCTCTTGGGCGTGCCCTCCGCGCTCGCGCCCTGCAACCACGTAC