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Detailed information on CNT30277684


BLAST search results

BLAST vs Swiss-Prot:
sp|P12359|PSBO_SPIOL, E-value = 1e-172

BLAST vs NONCODE:
NONCSAT002192, E-value = 2e-99

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30535986Chenopodium quinoaEucalyptus grandis54.1366.2680.62485forward
CNT30317789Chenopodium quinoaCorylus avellana15.9670.4483.22143forward
CNT30515361Chenopodium quinoaJuglans regia40.7482.5880.82365forward
CNT30700663Chenopodium quinoaQuercus lobata36.3861.5183.44326forward
CNT30378380Chenopodium quinoaArabidopsis thaliana26.5648.2883.19238forward
CNT30727933Chenopodium quinoaCorchorus capsularis52.7931.6483.3473forward
CNT30379731Chenopodium quinoaManihot esculenta59.7148.281.31535forward
CNT30524993Chenopodium quinoaPhaseolus vulgaris40.0731.381.06359forward
CNT30711968Chenopodium quinoaGlycine max48.7760.5380.78437forward
CNT3042430Chenopodium quinoaPrunus dulcis37.1730.5883.48333forward
CNT3091587Chenopodium quinoaSolanum tuberosum37.6191.3384.57337forward
CNT30567885Chenopodium quinoaActinidia chinensis77.3459.6980.81693forward
CNT3086209Chenopodium quinoaVigna radiata40.5125.4984.57363forward
CNT30543261Chenopodium quinoaBrassica napus57.4895.5579.61515forward
CNT30237252Chenopodium quinoaBrassica oleracea23.8829.3683.18214forward
CNT30508746Chenopodium quinoaSolanum lycopersicum56.2560.8783.53504forward
CNT30147114Chenopodium quinoaMedicago truncatula73.213781.71656forward
CNT30612678Chenopodium quinoaArabis alpina8.7132.187.1878forward
CNT30597992Chenopodium quinoaFraxinus excelsior2666.7686.27233forward
CNT30607994Chenopodium quinoaGossypium raimondii25.5626.3882.97229forward
CNT30207216Chenopodium quinoaHelianthus annuus21.6535.679.9194forward
CNT30718209Chenopodium quinoaMalus domestica golden54.836.4881.47491forward
CNT30626592Chenopodium quinoaDaucus carota65.9667.0882.06591forward
CNT30356664Chenopodium quinoaLactuca sativa39.7370.580.06356forward
CNT30408540Chenopodium quinoaPapaver somniferum37.0577.9378.92332forward
CNT30571041Chenopodium quinoaVitis vinifera20.9851.7987.77188forward
CNT30704492Chenopodium quinoaPrunus avium43.5341.5383.33390forward
CNT3023343Chenopodium quinoaPopulus trichocarpa34.9342.1881.47313forward
CNT30121175Chenopodium quinoaCitrus clementina28.9156.879.54259forward
CNT3036059Chenopodium quinoaCucumis melo41.4160.6284.64371forward
CNT30724288Chenopodium quinoaLupinus angustifolius66.1851.7581.28593forward
CNT3051042Chenopodium quinoaCucumis sativus46.7676.8882.1419forward

Expression of CNT30277684

Peptides detected in this lncRNA

>peptide 1 (79 aa)
MFSFWSSSSSPLPPAGNATALSYPVDPPLPFGSRKDDPLYDGTKNSPVKASGFPEATSCLMVKRKGTRSPPGSWTVTAA*

>peptide 2 (31 aa)
MPRRCHILWIHPCPLGLGRMILCMMGLRTLQ*

>peptide 3 (70 aa)
MSLVFWKSGGAFLLMPSALTANLVGSRQNFLAVYLPGLKAKESTPPAMVGHWLAVPVPLTSRYVLLWISS*

>peptide 4 (37 aa)
HEIYKELIIYKKQGYKFLLNIIEVIEIPYKLTTKRAQ*

Sequence

>CNT30277684
GACATGAAATCTACAAAGAACTGATAATATACAAGAAGCAGGGTTATAAGTTTCTCCTTAATATAATAGAAGTCATAGAAATCCCTTACAAACTTACAAC
AAAAAGAGCTCAATAATCATACAGAAATTACCCTGCAATCTATTGCTCAAGTTGTGCATACCAAACTCCCTCAATCTTCACATCTTTGGGAACCTTAGCT
CCCAAATCAGTGTCTGATGGCTGCAGACTCTGGAACACTCCGATAACCTCACCGGTCTCGGGCTTGCTTGAAGTCACACTCAAGGTAATTTTCCCTTTTG
ATGAAGCAGTGTTCTTGATGTTTTCCTTTTGGAGCTCTTCTTCGTCTCCTCTTCCTCCTGCAGGCAATGCCACGGCGTTGTCATATCCTGTGGATCCACC
CCTGCCCTTTGGGTCTAGGAAGGATGATCCTCTGTATGATGGGACTAAGAACTCTCCAGTAAAGGCCTCGGGTTTTCCTGAGGCAACAAGCTGCTTGATG
GTGAAGAGGAAGGGTACACGCTCACCACCAGGAAGCTGGACTGTGACTGCAGCGTAGTCAATGCCATCTTTCTCCTCAAACTTGACAGTGCCATCAGGTG
CAACCTCAAAGGGTCCCTCAATCTCATCAAGGGTGTAGGTTAGACGGGTCATGAGCTTGGTGTTTTGGAAGTCTGGTGGGGCGTTCTTGCTGATGCCTTC
GGCCTTGACAGCGAATTTAGTAGGCTCGAGGCAGAATTTCTTGGCAGTGTACTTGCCTGGCTTGAAGGCAAAGGAGTCAACTCCACCTGCAATGGTTGGG
CATTGGTTGGCTGTTCCGGTTCCTTTGACTTCGAGGTATGTCTTGCTTTGGATCTCATCATAGGTCAATCTCTTCGCTCCCTCGGCATTTGCCCCC