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Detailed information on CNT30713316


BLAST search results

BLAST vs Swiss-Prot:
sp|P83504|PSBO_BRACM, E-value = 2e-06

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30674637Malus domestica goldenSetaria viridis13.4156.5684.8125forward
CNT30546481Malus domestica goldenIpomoea triloba19.8531.8483.78185forward
CNT30727931Malus domestica goldenCorchorus capsularis24.8929.9484.48232forward
CNT30288231Malus domestica goldenTriticum aestivum6.0125.1187.556forward
CNT30542247Malus domestica goldenBrassica napus23.6136.9182.73220forward
CNT30264716Malus domestica goldenBrassica rapa22.111.4683.98206forward
CNT30607994Malus domestica goldenGossypium raimondii20.3921.8984.74190forward
CNT30621504Malus domestica goldenCajanus cajan20.9212.3783.08195forward
CNT3023343Malus domestica goldenPopulus trichocarpa20.0625.285.03187forward
CNT30319324Malus domestica goldenAsparagus officinalis13.4139.1881.6125forward
CNT30557665Malus domestica goldenPanicum hallii12.3420.6584.35115forward

Expression of CNT30713316

Peptides detected in this lncRNA

>peptide 1 (62 aa)
MSLVFWNSGGAFLFTLSALTVKDVGSRQNFLALYLPGLKANASDPPSMVGHWLAVPVPFTSK*

>peptide 2 (42 aa)
MSYRNDESGSSKSKSSNLGCIKALVSQVLEIRLQRASEPSRSR

>peptide 3 (30 aa)
MTKCQSYLIIKRNPMITLPKLLSNCQSKLK*

Sequence

>CNT30713316
GGAGCCATCTGGAGCAACTTCGAAAGGTCCTTCGATCTCATCGAGGGTGTAGGTTAGGCGGGTCATGAGCTTGGTGTTTTGGAACTCTGGTGGAGCGTTC
TTGTTCACACTCTCAGCCTTAACAGTGAAGGATGTTGGCTCTAGGCAGAACTTCTTGGCACTGTACTTGCCGGGTTTGAAGGCAAATGCTTCGGATCCTC
CGTCGATGGTTGGGCATTGGTTAGCAGTTCCTGTTCCCTTCACTTCCAAGTAGGTCAACCTCTTTGGAGCTCCCTCTGCACCTGCTCCCTGAAACACAAA
GTGTTGGCCAAGAATGACCAAATGTCAATCTTACTTAATAATAAAAAGGAATCCGATGATCACGTTACCTAAGTTGTTGTCAAACTGTCAGTCTAAATTG
AAATAGTGAGATTTATATCCATACTTTATAAAATCAAGTGATGCTGCGTTATGTTTGATAGGTTTTCAATCTCAACTATTAGATGAGCATACGTACATAT
GACATGCGATTTAGCTTGTGATCCAAACAACATAACATGTCATATATCTAAAACGAACATTACTCTCGTCTGGTGAGACGATCCAATTCTAACAAATTAA
TGGAGAACATGTCGATATTGCTACACAATTGCGTATTCAACTAGTCCAAACTTACCGCCTAACTATAGTTCATATTAACGAGTAAGTACTAGTAAACATG
AATTCACAAAAGTTCAAATGCAAACAACTTAGTCATTGTTCTACTTCTACACCACAATTTCAATCACATGAAGCAAGAAACTAAGGAGTGAAATGGAATT
AGCATGTCATACCGAAACGACGAGAGCGGAAGTAGCAAGAGCAAATCCAGCAATCTTGGATGCATCAAGGCACTTGTGAGCCAAGTCCTTGAGATCAGAT
TGCAAAGAGCAAGTGAGCCTAGCAGAAGCAGA