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Detailed information on CNT30592119


BLAST search results

BLAST vs Swiss-Prot:
sp|Q40459|PSBO_TOBAC, E-value = 8e-144

BLAST vs NONCODE:
NONSLYT000855, E-value = 9e-25

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30674885Musa acuminataSetaria viridis15.9540.4587.5144forward
CNT30535986Musa acuminataEucalyptus grandis74.3191.6784.5671forward
CNT30317789Musa acuminataCorylus avellana16.1771.9284.25146forward
CNT30700663Musa acuminataQuercus lobata16.1727.5583.56146forward
CNT30524993Musa acuminataPhaseolus vulgaris20.4916.1382.7185forward
CNT30181115Musa acuminataSecale cereale52.7135.985.71476forward
CNT30385398Musa acuminataTriticum turgidum6856.5483.39614forward
CNT30436686Musa acuminataAegilops tauschii52.7144.2486.13476forward
CNT30659249Musa acuminataTriticum dicoccoides52.7146.0885.5476forward
CNT30680731Musa acuminataTriticum urartu6854.5883.22614forward
CNT30342715Musa acuminataEragrostis tef55.5955.8485.26502forward
CNT30477612Musa acuminataArabidopsis halleri11.320.4883.33102forward
CNT30368483Musa acuminataSorghum bicolor55.4841.3485.83501forward
CNT3023343Musa acuminataPopulus trichocarpa16.9420.6281.05153forward
CNT30319471Musa acuminataAsparagus officinalis8.3125.1789.3375forward
CNT30583974Musa acuminataEchinochloa crusgalli75.1968.9385.27679forward
CNT30557822Musa acuminataPanicum hallii15.9520.6388.19144forward
CNT30724288Musa acuminataLupinus angustifolius20.7116.3280.75187forward

Expression of CNT30592119

Peptides detected in this lncRNA

>peptide 1 (35 aa)
RIIIYYSSLHLLFHFQHPYPNVRTMIGSKIQLQKI*

>peptide 2 (49 aa)
MVPVEDDVFLMFSLLSSSSSPLPPAGSATALSYPVEPPLPLGSRNEEPR*

>peptide 3 (35 aa)
MVGHWLAVPVPFTSMYVLLWISSYVSLFGTPSALAP

Sequence

>CNT30592119
AGGATTATCATATATTACAGTTCTCTCCATTTATTGTTTCATTTCCAGCATCCATATCCTAATGTAAGAACAATGATAGGAAGTAAGATTCAACTTCAGA
AAATATAAACTATTACATCATTAATACGTCTGTTAATTATTTCATAGATCAGAACAATCAAGCCAGCAGCAAGAGAGAGAAAGAGAGAGAGAGAGATGGT
ATATATATAGCTGACGCAGAAAGCTCTTCTCTACGACTCAAGCTGAGCATACCAGATGCCCTGGATCTTCACATCCTTGGGCGTCTTCGCCCCTAGGTCG
GTGTCCGACGGCTGAAAGCTCTCGAACACGCCGATCACCTCGCCCGTCTCTGGCTTGCTCTTGGTGACGCTCAGCGTGATGGTCCCCGTGGAGGACGACG
TGTTCTTGATGTTCTCCTTGCTCAGCTCCTCCTCGTCTCCCCTCCCTCCGGCGGGCAGCGCCACCGCGTTGTCGTACCCGGTGGAGCCCCCCCTCCCCTT
GGGGTCCAGGAACGAGGAGCCCCGGTAGCTGGGCACCAGGAACTTGCCGCTGAAGCTCTCGGGCTTGCCGGAGGCCACCAGCTGCTTGATGGTGAAGAGA
AAGGGAACGCGCTCGCCGCCGGGAAGCTGCACAGTGACGGCAGCGTAGTCGATTCCGTCCTTCTCCTCGAACTTGACGGCGCCGTCGGGGGAGACCTCGA
AGGGCCCCTCAATCTCGTCCAGCGTGTAGGTGAGGCATAATTTCTTGGTGTTGTACTTGCCCGGCTTGAAGGCGAACGACTCCACCCCGCCGTCGATGGT
CGGGCACTGGTTGGCCGTTCCCGTCCCCTTCACCTCCATGTACGTCTTACTCTGGATCTCGTCATATGTCAGCCTCTTCGGCACTCCCTCCGCGCTTGCT
CCC