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Detailed information on CNT30584089


BLAST search results

BLAST vs Swiss-Prot:
sp|Q40459|PSBO_TOBAC, E-value = 3e-122

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30675069Echinochloa crusgalliSetaria viridis18.3673.0698.16217forward
CNT30317789Echinochloa crusgalliCorylus avellana14.3883.7481.76170forward
CNT30700663Echinochloa crusgalliQuercus lobata10.6623.7782.54126forward
CNT30374900Echinochloa crusgalliArabidopsis thaliana21.8344.2581.78258forward
CNT30266704Echinochloa crusgalliChenopodium quinoa18.138.1581.78214forward
CNT3042430Echinochloa crusgalliPrunus dulcis21.7423.679.77257forward
CNT30122105Echinochloa crusgalliPhyscomitrium patens6.4322.0385.5376forward
CNT30290038Echinochloa crusgalliTriticum aestivum31.1344.8892.39368forward
CNT30542247Echinochloa crusgalliBrassica napus11.0821.9884.73131forward
CNT30238377Echinochloa crusgalliBrassica oleracea21.9148.2380.69259forward
CNT30259787Echinochloa crusgalliBrassica rapa20.7344.8780.82245forward
CNT30607994Echinochloa crusgalliGossypium raimondii19.1226.0479.2226forward
CNT30207216Echinochloa crusgalliHelianthus annuus13.8730.0982.32164forward
CNT30477612Echinochloa crusgalliArabidopsis halleri18.5343.9881.74219forward
CNT3023343Echinochloa crusgalliPopulus trichocarpa14.6423.3279.77173forward
CNT30319324Echinochloa crusgalliAsparagus officinalis13.1148.5988.39155forward
CNT30557734Echinochloa crusgalliPanicum hallii23.138.7896.7273forward
CNT30115348Echinochloa crusgalliEutrema salsugineum12.2721.5180.69145forward

Expression of CNT30584089

Peptides detected in this lncRNA

>peptide 1 (70 aa)
MSDCREQVILAAPASTPKALATWDAWRDGSEAEARPPILAGCMKVAAAWSDAAIVADVPSCALLPGTLPFF

>peptide 2 (70 aa)
MSLVFWNSGGAFLAMPSALTVKDVGSRQNFFIWYLPALNGNDSTPPSMVGHWFAVPVPFTSMYVLLWISS*

>peptide 3 (30 aa)
WTSSLLCVKKHCMRRIYTQGANLSTYLYAY*

>peptide 4 (62 aa)
DIKSAVCKEALHAKNIYTGRKFKHILIRVLDSRPLSSILSKCKAGNINTWEFMRTHERRNAY*

>peptide 5 (68 aa)
MTSPVSGLLLVTLNVMLPVDDAAFLMFSFRSSSSSPLPPAGSATALSYPEEPRKGTRSPPGSCTVTAA*

>peptide 6 (80 aa)
MGVHENTRKKKCILKIKDQQPVFALVDIQCLSFSIVHFPIDHGRTSKTRAARTRPPGSSRPWAPWPQGQCPTAAHSRTRR*

Sequence

>CNT30584089
TGGACATCAAGTCTGCTGTGTGTAAAGAAGCACTGCATGCGAAGAATATATACACAGGGCGCAAATTTAAGCACATACTTATACGCGTACTAGACAGCCG
TCCTCTCTCCTCGATCTTGTCCAAATGCAAAGCAGGCAATATTAATACATGGGAGTTCATGAGAACACACGAAAGAAGAAATGCATACTAAAAATTAAAG
ACCAACAGCCCGTATTTGCATTAGTAGATATACAATGCCTCAGTTTTTCCATCGTACACTTCCCCATCGATCACGGACGGACGTCTAAGACTCGAGCTGC
GCGTACCAGACCCCCTGGATCTTCACGTCCTTGGGCGCCTTGGCCCCAAGGTCAGTGTCCGACGGCTGCACACTCTCGAACACGCCGATGACCTCGCCGG
TCTCCGGGTTGCTCTTGGTGACGCTCAACGTGATGTTGCCCGTGGACGACGCGGCGTTCTTGATGTTCTCCTTCAGGAGCTCCTCCTCATCTCCCCTGCC
TCCGGCGGGGAGCGCGACGGCGTTGTCGTACCCGGAGGAGCCACGGAAGGGCACGCGCTCGCCGCCGGGGAGCTGCACGGTGACGGCGGCGTAGTCGATG
CCGTCCTTCTCCTCGAACTTGAGGGTGCCGTCGGAGGCGACCTCGAGCGGGCCCTCGATCTCGTCCAGGGTGTAGGTGAGGCGGGTCATGAGCTTGGTCT
TCTGGAACTCGGGCGGCGCGTTCTTGGCGATGCCCTCCGCCTTGACGGTGAAGGACGTCGGCTCCAGGCAGAACTTCTTCATCTGGTACTTGCCGGCCTT
GAACGGGAACGACTCCACGCCGCCGTCGATGGTCGGGCACTGGTTCGCCGTGCCGGTTCCCTTCACCTCCATGTACGTCTTGCTCTGGATCTCGTCGTAG
GTCAGCCTCTTCGGCGGCGAAGCCTGCGAGCTTGGCGGCGTCGACGCACTTGCTGGCGACCTCCCTGATGTCGGACTGCAGGGAGCAGGTGATCCTGGCG
GCGCCGGCGTCGACGCCGAAGGCCCTGGCGACGTGGGACGCCTGGCGGGACGGCAGCGAGGCGGAGGCCCGGCCGCCGATCTTGGCCGGCTGCATGAAGG
TGGCCGCGGCTTGGAGTGACGCTGCCATTGTCGCCGATGTGCCTAGCTGCGCTCTCCTACCCGGGACCTTGCCTTTTTTTCC