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Detailed information on CNT30238377


BLAST search results

BLAST vs Swiss-Prot:
sp|P23321|PSBO1_ARATH, E-value = 5e-107

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30674637Brassica oleraceaSetaria viridis26.0763.3584.29140forward
CNT30547255Brassica oleraceaIpomoea triloba26.2627.1285.11141forward
CNT30374900Brassica oleraceaArabidopsis thaliana4642.3786.23247forward
CNT30266710Brassica oleraceaChenopodium quinoa4628.8980.97247forward
CNT30727931Brassica oleraceaCorchorus capsularis45.0731.2383.06242forward
CNT30379569Brassica oleraceaManihot esculenta25.5115.5583.21137forward
CNT30524993Brassica oleraceaPhaseolus vulgaris46.3721.7183.13249forward
CNT30710612Brassica oleraceaGlycine max46.3724.1383.13249forward
CNT3042430Brassica oleraceaPrunus dulcis47.323.3282.68254forward
CNT30179447Brassica oleraceaSecale cereale41.7122.3879.91224forward
CNT30287195Brassica oleraceaTriticum aestivum47.328.6781.1254forward
CNT30567884Brassica oleraceaActinidia chinensis47.312.8979.53254forward
CNT3086209Brassica oleraceaVigna radiata46.1817.4279.44248forward
CNT30508746Brassica oleraceaSolanum lycopersicum41.7127.0579.91224forward
CNT30436022Brassica oleraceaAegilops tauschii47.325.7381.1254forward
CNT30657716Brassica oleraceaTriticum dicoccoides47.326.2781.1254forward
CNT30309441Brassica oleraceaCamelina sativa29.4233.494.3158forward
CNT30259787Brassica oleraceaBrassica rapa96.8395.2489.04520forward
CNT30607994Brassica oleraceaGossypium raimondii40.625.1283.94218forward
CNT30718209Brassica oleraceaMalus domestica golden42.6417.0183.84229forward
CNT30626592Brassica oleraceaDaucus carota44.5127.1382.85239forward
CNT30680665Brassica oleraceaTriticum urartu47.4923.4881.18255forward
CNT30342712Brassica oleraceaEragrostis tef48.2329.7780.69259forward
CNT30368337Brassica oleraceaSorghum bicolor26.0721.0582.86140forward
CNT30704492Brassica oleraceaPrunus avium47.327.0583.07254forward
CNT3023343Brassica oleraceaPopulus trichocarpa39.4828.5783.02212forward
CNT30319324Brassica oleraceaAsparagus officinalis26.0743.8982.86140forward
CNT3036059Brassica oleraceaCucumis melo46.7441.0179.68251forward
CNT30584089Brassica oleraceaEchinochloa crusgalli48.2321.9180.69259forward
CNT30557734Brassica oleraceaPanicum hallii46.5535.5180250forward
CNT30724288Brassica oleraceaLupinus angustifolius47.6722.3480.86256forward
CNT3050994Brassica oleraceaCucumis sativus21.619.4383.62116forward

Expression of CNT30238377

Peptides detected in this lncRNA

>peptide 1 (70 aa)
MSLVFWKSGGAFLLTLSALTVKEVGSKQNFLPAYFPGLKEKVSEPPSMVGHWLAVPVPFTSMYVLLCISS*

>peptide 2 (42 aa)
MICRRSESTGGEHCHEKERSRSSPTGGMWWRIGERLPWPQMVQ

>peptide 3 (88 aa)
NLEGAFDLVKSVGETGHELGVLEVRRCVLANTLSLDGEGSWLEAELLAGVLSRFEGESLRATVNGWALVGGSSSLHFHVCLALYLIVI*

Sequence

>CNT30238377
AACCTCGAAGGGGCCTTCGATCTCGTCAAGAGTGTAGGTGAGACGGGTCATGAGCTTGGTGTTCTGGAAGTCAGGAGGTGCGTTCTTGCTAACACTCTCA
GCCTTGACGGTGAAGGAAGTTGGCTCGAAGCAGAACTTCTTGCCGGCGTACTTTCCCGGTTTGAAGGAGAAAGTCTCAGAGCCACCGTCAATGGTTGGGC
ACTGGTTGGCGGTTCCAGTTCCCTTCACTTCCATGTATGTCTTGCTCTGTATCTCATCGTGATATGAGAAAGTTACCGAGACGACGAGAGCAGAGGTTGC
TAACGCAAATCCGGAGATCTTGACAGCGTCGGAGCATTTGCCGGCGAAGTCCTTGAAGTCAGACTGGAAGGAACAAGTGAGGCGAGCAGAGGAAGTTTCT
AGCCCGAATGATTTGCCGACGGTCTGAGTCGACCGGAGGTGAGCACTGCCACGAGAAGGAGCGGTCGAGATCTTCGCCGACTGGAGGAATGTGGTGGCGG
ATTGGAGAGAGGCTGCCATGGCCACAGATGGTTCAGG