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Detailed information on CNT30597992


BLAST search results

BLAST vs Swiss-Prot:
sp|P84989|PSBO_POPEU, E-value = 6e-14

BLAST vs NONCODE:
NONGMAT000837, E-value = 4e-46

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30674637Fraxinus excelsiorSetaria viridis16.9126.786.4459forward
CNT30535986Fraxinus excelsiorEucalyptus grandis59.3128.2885.02207forward
CNT30317789Fraxinus excelsiorCorylus avellana22.6438.9283.5479forward
CNT30546481Fraxinus excelsiorIpomoea triloba28.6517.2186100forward
CNT30515312Fraxinus excelsiorJuglans regia58.1712.9881.77203forward
CNT30700663Fraxinus excelsiorQuercus lobata51.2933.7786.03179forward
CNT30378380Fraxinus excelsiorArabidopsis thaliana31.2322.1184.4109forward
CNT30277684Fraxinus excelsiorChenopodium quinoa66.762686.27233forward
CNT30727933Fraxinus excelsiorCorchorus capsularis64.4715.0584225forward
CNT30379569Fraxinus excelsiorManihot esculenta53.321.1185.48186forward
CNT30524939Fraxinus excelsiorPhaseolus vulgaris65.920.7882.61230forward
CNT30711854Fraxinus excelsiorGlycine max65.931.1785.22230forward
CNT3042430Fraxinus excelsiorPrunus dulcis39.8312.7683.45139forward
CNT3091587Fraxinus excelsiorSolanum tuberosum61.658.2788.84215forward
CNT30181115Fraxinus excelsiorSecale cereale36.399.5882.68127forward
CNT30288970Fraxinus excelsiorTriticum aestivum36.399.3384.25127forward
CNT30221070Fraxinus excelsiorHordeum vulgare36.3954.7483.46127forward
CNT30386646Fraxinus excelsiorTriticum turgidum36.399.6484.25127forward
CNT30567883Fraxinus excelsiorActinidia chinensis70.211.3786.53245forward
CNT30592113Fraxinus excelsiorMusa acuminata57.3127.4782.5200forward
CNT3086209Fraxinus excelsiorVigna radiata60.7414.8984.43212forward
CNT30543700Fraxinus excelsiorBrassica napus24.647.3384.8886forward
CNT30234321Fraxinus excelsiorBrassica oleracea24.646.3884.8886forward
CNT30508746Fraxinus excelsiorSolanum lycopersicum65.0427.4288.11227forward
CNT30147296Fraxinus excelsiorMedicago truncatula57.8835.3887.13202forward
CNT30436551Fraxinus excelsiorAegilops tauschii36.3913.4283.46127forward
CNT30242448Fraxinus excelsiorAvena sativa36.3923.8382.68127forward
CNT30659249Fraxinus excelsiorTriticum dicoccoides27.799.3986.697forward
CNT30264716Fraxinus excelsiorBrassica rapa23.214.5187.6581forward
CNT30612678Fraxinus excelsiorArabis alpina16.6223.8787.9358forward
CNT309111Fraxinus excelsiorZea mays27.7913.2285.5797forward
CNT30607994Fraxinus excelsiorGossypium raimondii24.369.7987.0685forward
CNT30718209Fraxinus excelsiorMalus domestica golden57.3114.8682.5200forward
CNT30626592Fraxinus excelsiorDaucus carota58.1723.0485.71203forward
CNT30681552Fraxinus excelsiorTriticum urartu36.3914.3283.46127forward
CNT30348021Fraxinus excelsiorEragrostis tef28.3735.6184.8599forward
CNT30477612Fraxinus excelsiorArabidopsis halleri24.0716.8785.7184forward
CNT30368337Fraxinus excelsiorSorghum bicolor27.7914.5984.5497forward
CNT30621504Fraxinus excelsiorCajanus cajan24.365.3984.7185forward
CNT30356664Fraxinus excelsiorLactuca sativa63.3243.7682.81221forward
CNT30408540Fraxinus excelsiorPapaver somniferum53.0143.4380.54185forward
CNT30571041Fraxinus excelsiorVitis vinifera56.4554.2786.8197forward
CNT30704492Fraxinus excelsiorPrunus avium58.1721.6285.22203forward
CNT3023343Fraxinus excelsiorPopulus trichocarpa42.4119.9586.49148forward
CNT30121175Fraxinus excelsiorCitrus clementina25.7919.7485.5690forward
CNT3036059Fraxinus excelsiorCucumis melo49.5728.2782.66173forward
CNT30584070Fraxinus excelsiorEchinochloa crusgalli27.798.2385.5797forward
CNT30724288Fraxinus excelsiorLupinus angustifolius46.4214.1485.8162forward
CNT3051042Fraxinus excelsiorCucumis sativus59.8938.3582.3209forward

Expression of CNT30597992

Peptides detected in this lncRNA

>peptide 1 (41 aa)
LYDGTRNSPLKLSGLPDATSCLMVKRKGTRSPPGSCTVTAA*

Sequence

>CNT30597992
CCCTGTATGATGGCACAAGGAACTCGCCACTGAAGCTCTCTGGTTTGCCAGATGCTACAAGCTGTTTGATGGTGAAGAGGAAGGGCACACGCTCACCACC
TGGAAGCTGCACTGTAACGGCAGCATAGTCAATGCCATCCTTCTCCTCAAACTTGACAGAGCCATCAGGAGATACCACAAAAGGTCCCTCAATCTCGTCG
AGGGTGTAGGTTAAACGGGTCATAAGCTTTGTGTTCTGAAACTCAGGGGGCAAAGCCGTCAACGCCACCATCAATGGTTGGGCATTGGTTAGCAGTCCCA
GTTCCCTTTACTTCCAGATACGTCTTGCTTTGAATTTCATCGTAGGTTA