Detailed information on CNT30571041


BLAST search results

BLAST vs Swiss-Prot:
sp|P26320|PSBO_SOLTU, E-value = 4e-74

BLAST vs NONCODE:
NONCSAT002192, E-value = 3e-41

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30317789Vitis viniferaCorylus avellana19.5634.9887.3271forward
CNT30515312Vitis viniferaJuglans regia55.9212.9881.77203forward
CNT30700663Vitis viniferaQuercus lobata49.0433.5887.08178forward
CNT30277684Vitis viniferaChenopodium quinoa51.7920.9887.77188forward
CNT30727933Vitis viniferaCorchorus capsularis55.113.3883.5200forward
CNT30379569Vitis viniferaManihot esculenta50.962184.86185forward
CNT30711854Vitis viniferaGlycine max48.4823.8584.66176forward
CNT3042430Vitis viniferaPrunus dulcis41.8713.9683.55152forward
CNT30567883Vitis viniferaActinidia chinensis57.39.6587.98208forward
CNT3086209Vitis viniferaVigna radiata48.4812.3685.8176forward
CNT30508746Vitis viniferaSolanum lycopersicum55.9224.5289.16203forward
CNT30147296Vitis viniferaMedicago truncatula49.5931.5285180forward
CNT30597992Vitis viniferaFraxinus excelsior54.2756.4586.8197forward
CNT30607994Vitis viniferaGossypium raimondii40.2216.8284.25146forward
CNT30718209Vitis viniferaMalus domestica golden56.7515.383.01206forward
CNT30626592Vitis viniferaDaucus carota54.2722.3684.26197forward
CNT30342712Vitis viniferaEragrostis tef41.3217.2480.67150forward
CNT30621504Vitis viniferaCajanus cajan25.075.7783.5291forward
CNT30356640Vitis viniferaLactuca sativa55.9230.4884.24203forward
CNT30704492Vitis viniferaPrunus avium55.121.383.5200forward
CNT3023343Vitis viniferaPopulus trichocarpa42.4220.7585.71154forward
CNT3036059Vitis viniferaCucumis melo50.1429.7486.81182forward
CNT30557822Vitis viniferaPanicum hallii41.3221.4980.67150forward
CNT30724288Vitis viniferaLupinus angustifolius53.7217.0283.59195forward
CNT3051042Vitis viniferaCucumis sativus50.1433.3986.81182forward

Expression of CNT30571041

Peptides detected in this lncRNA

>peptide 1 (57 aa)
MSLVFWNSALTVNDVGSKQNFFSWYFPDLKANESTPPSMVGHWLAVPVPFTSMYVLLW

>peptide 2 (59 aa)
FVWFAGCNELFDGEEEGHTLTTGQLNSDSSIVNSIFLLKLNGAITRYFKWSLNLIKGVC*

Sequence

>CNT30571041
AATTTGTCTGGTTTGCCGGATGCAACGAGCTGTTTGATGGTGAAGAGGAAGGGCACACGCTCACCACCGGGCAGCTGAACAGTGACAGCAGCATAGTCAA
TTCCATCTTTCTCCTCAAACTTAACGGTGCCATCACTAGATACTTCAAATGGTCCCTCAATCTCATCAAGGGTGTATGTTAACCGAGTCATGAGCTTGGT
GTTTTGGAATTCAGCCTTGACGGTGAATGATGTAGGCTCTAAGCAGAACTTCTTCAGTTGGTATTTTCCAGACTTGAAGGCAAATGAATCGACCCCTCCG
TCAATGGTTGGGCATTGGTTAGCAGTTCCAGTTCCCTTTACTTCCATGTATGTCTTACTCTGG