Detailed information on CNT30357143


BLAST search results

BLAST vs Swiss-Prot:
sp|P23322|PSBO_SOLLC, E-value = 3e-93

BLAST vs NONCODE:
NONSLYT000855, E-value = 5e-38

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30535986Lactuca sativaEucalyptus grandis42.0241.3979.87303forward
CNT30317789Lactuca sativaCorylus avellana20.6773.481.88149forward
CNT3091587Lactuca sativaSolanum tuberosum45.3588.6281.35327forward
CNT30565923Lactuca sativaActinidia chinensis46.3216.4484.43334forward
CNT30147240Lactuca sativaMedicago truncatula33.2965.0482.92240forward
CNT30681647Lactuca sativaTriticum urartu11.121.338580forward
CNT3023343Lactuca sativaPopulus trichocarpa38.1437.0682.55275forward
CNT30319471Lactuca sativaAsparagus officinalis10.2624.8390.5474forward
CNT3051042Lactuca sativaCucumis sativus44.859.2783.28323forward

Expression of CNT30357143

Peptides detected in this lncRNA

>peptide 1 (59 aa)
SGLLEVTLKVIFPVDAATFFTFSLESSSSSPLPPAGKATALSYPVEPPLPFGSRNDDPL*

>peptide 2 (31 aa)
MSCFGSHRKPCRCSEKTLAADGRRHPPWLVA*

>peptide 3 (67 aa)
MVGHWLAVPVPFTSMYVLLWISSKALQMLGEDFSCRRPETPTLVGCMKVAAACSEAAIAASFQTESS*

Sequence

>CNT30357143
ATCCGGCTTGCTTGAAGTGACACTCAAAGTAATCTTTCCCGTTGATGCTGCAACATTCTTTACGTTCTCTTTAGAAAGCTCCTCTTCATCTCCCCTCCCT
CCTGCCGGCAAAGCAACCGCATTATCATATCCGGTGGAACCACCTCTACCCTTTGGGTCAAGAAATGACGATCCTCTGTAAGATGGCACTAGAAATTCTC
CACTAAAGCTCTCTGGTTTCCCAGATGCTACGAGCTGTTTGATTGTGAATAGGAATGGCACACGTTCACCTCCGGGAAGCTGAACAGTCACAGCAGCGTA
GTCGATTCCGTCTTTCTCCTCGAACTTAATGGATCCATCAGGAGACACTTCGAGGGGACCCTCGATCTCGTCAAGGGTGTAGAGTTCTTGCTTACACCTT
CGGCTTTGACTGTGAATGATGTGGGTTCAAGGCAGAATTTCTTGGCGTTGTATTTGCCGGACTTGAAAGCAAACCCAGTAACTCCGCCGTCGATGGTTGG
GCATTGGTTAGCTGTTCCGGTTCCTTTTACTTCCATGTATGTCTTGCTTTGGATCTCATCGAAAGCCTTGCAGATGCTCGGAGAAGACTTTAGCTGCAGA
CGGCCGGAGACACCCACCTTGGTTGGTTGCATGAAAGTTGCCGCTGCTTGCAGTGAAGCTGCCATTGCTGCTTCTTTCCAAACCGAATCGTCGTGATTAG
TTGCAGAAAGTGGGATTGAAG