« Back to Citrus clementina search


Detailed information on CNT30121175


BLAST search results

BLAST vs Swiss-Prot:
sp|P84989|PSBO_POPEU, E-value = 3e-20

BLAST vs NONCODE:
NONSLYT000855, E-value = 2e-42

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30535986Citrus clementinaEucalyptus grandis73.2545.6380.24334forward
CNT30515361Citrus clementinaJuglans regia74.5676.9283.82340forward
CNT30700663Citrus clementinaQuercus lobata48.0341.3284.47219forward
CNT30378380Citrus clementinaArabidopsis thaliana22.8121.181.73104forward
CNT30277684Citrus clementinaChenopodium quinoa56.828.9179.54259forward
CNT30727933Citrus clementinaCorchorus capsularis40.5712.3788.11185forward
CNT30379569Citrus clementinaManihot esculenta39.9120.6685.71182forward
CNT30525147Citrus clementinaPhaseolus vulgaris71.7153.4382.57327forward
CNT30708164Citrus clementinaGlycine max70.8325.3582.66323forward
CNT3042430Citrus clementinaPrunus dulcis63.3826.5484.08289forward
CNT3091254Citrus clementinaSolanum tuberosum55.716.8183.86254forward
CNT30567883Citrus clementinaActinidia chinensis73.0315.4583.48333forward
CNT30592113Citrus clementinaMusa acuminata24.3415.2581.98111forward
CNT3086112Citrus clementinaVigna radiata29.6121.9282.96135forward
CNT30543700Citrus clementinaBrassica napus20.187.8483.792forward
CNT30234321Citrus clementinaBrassica oleracea20.186.8283.792forward
CNT30508746Citrus clementinaSolanum lycopersicum37.520.6581.29171forward
CNT30147114Citrus clementinaMedicago truncatula70.8318.2281.11323forward
CNT30244672Citrus clementinaAvena sativa35.9622.0780.49164forward
CNT30597992Citrus clementinaFraxinus excelsior19.7425.7985.5690forward
CNT30607994Citrus clementinaGossypium raimondii55.729.2686.61254forward
CNT30718209Citrus clementinaMalus domestica golden33.9911.5283.23155forward
CNT30626592Citrus clementinaDaucus carota53.9527.9280.08246forward
CNT30408540Citrus clementinaPapaver somniferum22.8124.4182.69104forward
CNT30704474Citrus clementinaPrunus avium37.523.0184.21171forward
CNT3023343Citrus clementinaPopulus trichocarpa69.5242.7285.8317forward
CNT30724033Citrus clementinaLupinus angustifolius73.4629.8382.99335forward
CNT3051042Citrus clementinaCucumis sativus59.8750.0982.78273forward

Expression of CNT30121175

Peptides detected in this lncRNA

>peptide 1 (33 aa)
SHISIRWLKALKHSNNLSSLRLALGNAEGDLPC*

Sequence

>CNT30121175
CTCCCATATCAGTATCAGATGGCTGAAGGCTCTCAAACACTCCAATAACCTCTCCAGTCTCAGGCTTGCTCTTGGTAACGCTGAGGGTGATCTTCCCTGT
TGAAGATGAAGTATTCTTGATATTCTCCTTGGCGAGATCTTCCTCATCCCCTCTTCCGCCAGCAGGCAATGCAATAGCATTGTCATAACCAGTTGAACCA
CCCCTTCCCTTTGGGTCCAAGAAGGATGATCCACGGTATGATGGTACAAGGAACTCTCCTCCGAAATTCTCAGGCTTGCCTGATGCTACCAATTGTTTGA
TGGTGAAAAGGAAGGGCACACGCTCGCCTCCAGGCTGCTGCTGCGAGCGGGTACCACACCCACCTTGGTGGGTTGCATCAGTGTAGCTGCGGCTTGTAAC
GAGGCTGCCATCTTGCTCCCTACCACTCGTGGGTTACTTGCTAGTATCCCTTTATC