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Detailed information on CNT30704492


BLAST search results

BLAST vs Swiss-Prot:
sp|P23322|PSBO_SOLLC, E-value = 8e-87

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30674637Prunus aviumSetaria viridis13.3156.5682.4125forward
CNT30535986Prunus aviumEucalyptus grandis17.1521.9982.61161forward
CNT30546556Prunus aviumIpomoea triloba22.3617.5782.86210forward
CNT30515294Prunus aviumJuglans regia17.1523.7185.71161forward
CNT30374900Prunus aviumArabidopsis thaliana14.9124.0187.14140forward
CNT30277684Prunus aviumChenopodium quinoa41.5343.5383.33390forward
CNT30727932Prunus aviumCorchorus capsularis35.2525.3885.2331forward
CNT30379731Prunus aviumManihot esculenta39.433.3382.16370forward
CNT30524993Prunus aviumPhaseolus vulgaris38.9831.9181.97366forward
CNT30710612Prunus aviumGlycine max37.3834.0180.63351forward
CNT3042430Prunus aviumPrunus dulcis35.1430.398.18330forward
CNT3091587Prunus aviumSolanum tuberosum16.7242.5584.08157forward
CNT30287195Prunus aviumTriticum aestivum27.0528.6779.53254forward
CNT30221336Prunus aviumHordeum vulgare19.3826.3481.32182forward
CNT30385696Prunus aviumTriticum turgidum19.3844.9481.32182forward
CNT30567880Prunus aviumActinidia chinensis39.416.2482.16370forward
CNT30592113Prunus aviumMusa acuminata17.7822.9481.44167forward
CNT3086209Prunus aviumVigna radiata38.5525.4281.49362forward
CNT30542247Prunus aviumBrassica napus25.1339.682.63236forward
CNT30238377Prunus aviumBrassica oleracea27.0547.383.07254forward
CNT30508746Prunus aviumSolanum lycopersicum40.0445.4183.24376forward
CNT30147114Prunus aviumMedicago truncatula38.8720.5980.82365forward
CNT30436022Prunus aviumAegilops tauschii27.0525.7379.53254forward
CNT30657734Prunus aviumTriticum dicoccoides27.0528.179.53254forward
CNT30264716Prunus aviumBrassica rapa23.3212.1884.02219forward
CNT30612619Prunus aviumArabis alpina13.3132.9884.8125forward
CNT30597992Prunus aviumFraxinus excelsior21.6258.1785.22203forward
CNT309111Prunus aviumZea mays19.725.280185forward
CNT30607994Prunus aviumGossypium raimondii23.8625.8185.27224forward
CNT30718209Prunus aviumMalus domestica golden40.1528.0189.39377forward
CNT30626592Prunus aviumDaucus carota41.5344.2783.59390forward
CNT30680645Prunus aviumTriticum urartu27.0526.5479.53254forward
CNT30348024Prunus aviumEragrostis tef27.0541.1779.92254forward
CNT30368337Prunus aviumSorghum bicolor19.727.8280185forward
CNT30621504Prunus aviumCajanus cajan22.2613.2682.3209forward
CNT30355286Prunus aviumLactuca sativa34.9354.0480.18328forward
CNT30408540Prunus aviumPapaver somniferum18.139.9181.76170forward
CNT30571041Prunus aviumVitis vinifera21.355.183.5200forward
CNT3023343Prunus aviumPopulus trichocarpa22.6828.7184.04213forward
CNT3036059Prunus aviumCucumis melo39.7260.9582.04373forward
CNT30584058Prunus aviumEchinochloa crusgalli27.0520.0679.92254forward
CNT30557734Prunus aviumPanicum hallii25.2433.6680.59237forward
CNT30724288Prunus aviumLupinus angustifolius38.8731.8583.56365forward
CNT3051042Prunus aviumCucumis sativus23.8641.183.48224forward

Expression of CNT30704492

Peptides detected in this lncRNA

>peptide 1 (34 aa)
MVGHWFAVPVPFTSKYVLLWISSKALETFWEDLS*

>peptide 2 (36 aa)
RNSPPKFSGLPEATSCLMVKRKGTRSPPGSWTVTAA*

>peptide 3 (41 aa)
MFCLPSGKFLVWDKDTGGQMSMVISFPSYSTYYHSFILSTM*

>peptide 4 (62 aa)
MSVAAAWSEAAMVGVVLQFQCDLCVRNRVFGSVFVWQLGSYLVGFGVSWIMDRIRLALSLVE*

Sequence

>CNT30704492
TAGAAACTCCCCTCCAAAGTTTTCAGGTTTGCCCGAGGCTACAAGCTGTTTGATGGTGAAGAGGAAAGGGACACGCTCGCCTCCGGGGAGCTGGACTGTG
ACTGCAGCATAGTCAATCCCATCTTTCTCCTCAAACTTGAGAGCGCCATCTGGGGACACTTCGAAAGGCCCTTCGATCTCATCGAGGGTGTAGGTTAGAC
GGGTCATCAGCTTGGTGTTTTGGAACTCTGGTGGAGCATTCTTGTTCACACTGTCTGCCTTGACAGTGAAGGATGTGGGCTCTAGGCAGAACTTCTTGGC
AGTGTACTTGCCCGGCTTGAAGGCGAAGGCTTCTGACCCTCCATCAATGGTTGGGCATTGGTTTGCAGTTCCTGTCCCCTTCACTTCCAAGTATGTCTTG
CTCTGGATTTCATCAAAGGCCTTGGAGACATTCTGGGAGGACCTGAGCTGAAGGCTGGTCCTTGACGGCGCGCCCACCTTGGTGGGCTGCATGAGCGTAG
CAGCTGCTTGGAGTGAGGCTGCCATGGTTGGTGTTGTTTTGCAGTTCCAATGTGATCTCTGTGTTCGAAACAGAGTATTTGGAAGTGTTTTTGTGTGGCA
ATTGGGAAGTTATTTGGTGGGCTTTGGAGTGAGTTGGATAATGGATAGGATAAGGCTTGCTCTCTCATTGGTTGAATGAAGGTAATGAGTTTAGATGTTT
TGTTTGCCAAGTGGCAAGTTTCTTGTTTGGGATAAAGATACTGGTGGTCAGATGAGCATGGTCATATCCTTTCCCTCCTACTCCACATATTATCATAGTT
TCATTTTGTCTACAATGTAGACTTTTGCAATGAAGGAGAATGTGACATTAATCATTCAGAAAACCAGAAAAAGAAAGAAAAGTGATTAAAAAAAAAAATT
GAAAGCAGCCGGTTTCGAACCTGCAACTCAGAGTTGAAA