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Detailed information on CNT30546556


BLAST search results

BLAST vs Swiss-Prot:
sp|P83504|PSBO_BRACM, E-value = 6e-13

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30317789Ipomoea trilobaCorylus avellana16.9910080.3203forward
CNT30727931Ipomoea trilobaCorchorus capsularis19.7530.4586.44236forward
CNT30710612Ipomoea trilobaGlycine max21.1724.5284.19253forward
CNT3042430Ipomoea trilobaPrunus dulcis21.0923.1482.94252forward
CNT30288231Ipomoea trilobaTriticum aestivum5.6930.4985.2968forward
CNT30565923Ipomoea trilobaActinidia chinensis20.6712.1683.4247forward
CNT3086209Ipomoea trilobaVigna radiata20.7517.4283.47248forward
CNT30508746Ipomoea trilobaSolanum lycopersicum17.2424.8883.98206forward
CNT30607994Ipomoea trilobaGossypium raimondii20.6728.4684.62247forward
CNT30626592Ipomoea trilobaDaucus carota19.6726.6782.55235forward
CNT30357144Ipomoea trilobaLactuca sativa18.2423.1279.82218forward
CNT30704492Ipomoea trilobaPrunus avium17.5722.3682.86210forward
CNT3023343Ipomoea trilobaPopulus trichocarpa20.6733.2984.62247forward
CNT3036059Ipomoea trilobaCucumis melo17.2433.6683.01206forward
CNT30724033Ipomoea trilobaLupinus angustifolius20.521.8281.22245forward

Expression of CNT30546556

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MLFACFLIQTMRYRITLCIIQTDQTIIGIDP*

>peptide 2 (41 aa)
MTSHMGGHYMPSEHKVLGIAIYYITVTLHENNIPILILYRL*

>peptide 3 (93 aa)
GKEKGHTLTARKLNCYSSIVDPILFLKLNCAISLVFWNSGGAFLLTPSAFTVNDVGSKQNFFALYLPGLNAKLSTPPSIVGHWLAVPDPFTSK*

Sequence

>CNT30546556
ATGGTAAAGAGAAAGGGCACACGCTCACCGCCAGGAAGTTGAACTGTTACAGCAGCATAGTCGATCCCATCCTTTTCCTCAAACTTAACTGTGCCATCAG
CTTGGTGTTTTGGAATTCTGGCGGGGCATTCTTGCTCACACCCTCAGCCTTCACAGTGAATGATGTTGGCTCTAAACAGAACTTCTTCGCATTGTATTTG
CCTGGCTTGAACGCAAAGCTGTCAACACCCCCTTCAATCGTCGGGCACTGGTTAGCAGTTCCAGATCCCTTCACTTCCAAGTAAGTCTTGCTCTGGATCT
CATCGAATGTTAGCCGTTTTGGAACTCCTTCAGCATTTGCTCCCTGTATATCCAATAACTCATCCAAATTCATACTAAAACAAGGGGAAAGCAAGATAAG
AGAGTGCATATATAACTTTGATGATAACATTCATACCCTTATAGAAAGGACAACATTCATCAATCCCAGAATTACAATTGGATGTAATTAGCATAATCAA
GAATAGACTAAGGTCTAGAGGTTTCATCAACAGTTTCCAGTAATCATACTATTCTTGAAAGGTATGCTGTTTGCCTGTTTTCTAATTCAGACAATGAGAT
ATAGAATTACTCTGTGCATTATTCAAACTGATCAAACAATCATTGGCATAGATCCATAGCTATATACTATTTTTTTTTGAATGCTATTGACTCTATTACA
TTGTAGTATCTGTTGATCTATACTTTCTCAACCTATTGAAGCACAAAGAGTCAACAACACTTTCAGCTTGATCTCATGACCTCCCATATGGGAGGTCACT
ACATGCCATCTGAGCACAAAGTGCTTGGCATAGCTATATACTATATTACAGTAACTCTACATGAAAATAACATTCCAATACTTATTCTATACAGGTTATG
AAGAAGTTATAGCAAAGGTGAAAGTTAGAACATACTGAGACAACAAGGGCAGAAGTGGCAAGAGCAAAGCCAGCAACTTTGGCAGCATCAGAGCACCTCT
GAGCCAAGTCCTTGAGATCAGCCTGCAGGGAGCAAGTGAGCCTGGAAGTGCCCGGTTCGACGCCAAAGGCTTTGCTGACACTCAGAGCAGACCTCAACTG
GTTAGTGCTTCTTCCTTGAACACCAACCTTGGCTGGTTGCATAAGAGTTGCAGCTGCTTGTAGTGAGGCTGCCATTGTTTTTTTTGTGGTTTTGA