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Detailed information on CNT3091587


BLAST search results

BLAST vs Swiss-Prot:
sp|P23322|PSBO_SOLLC, E-value = 5e-81

BLAST vs NONCODE:
NONSLYT000855, E-value = 5e-89

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30535986Solanum tuberosumEucalyptus grandis82.6641.6780.66305forward
CNT30546481Solanum tuberosumIpomoea triloba26.2916.790.7297forward
CNT30700663Solanum tuberosumQuercus lobata92.4164.3481.52341forward
CNT30378380Solanum tuberosumArabidopsis thaliana69.3851.9380.47256forward
CNT30277684Solanum tuberosumChenopodium quinoa91.3337.6184.57337forward
CNT30727933Solanum tuberosumCorchorus capsularis82.3820.3383.55304forward
CNT30379569Solanum tuberosumManihot esculenta83.4734.9683.12308forward
CNT30525147Solanum tuberosumPhaseolus vulgaris39.5723.8685.62146forward
CNT30711968Solanum tuberosumGlycine max83.7442.881.23309forward
CNT3042430Solanum tuberosumPrunus dulcis29.279.9285.19108forward
CNT30181115Solanum tuberosumSecale cereale27.647.6984.31102forward
CNT30288970Solanum tuberosumTriticum aestivum67.4818.379.12249forward
CNT30386646Solanum tuberosumTriticum turgidum67.4818.8979.12249forward
CNT30567883Solanum tuberosumActinidia chinensis95.6616.3883.85353forward
CNT30592113Solanum tuberosumMusa acuminata83.4742.3177.6308forward
CNT3086209Solanum tuberosumVigna radiata41.4610.7486.27153forward
CNT30542247Solanum tuberosumBrassica napus31.4419.4687.93116forward
CNT30237252Solanum tuberosumBrassica oleracea31.4415.9187.93116forward
CNT30147296Solanum tuberosumMedicago truncatula82.1153.0680.53303forward
CNT30436551Solanum tuberosumAegilops tauschii27.6410.7884.31102forward
CNT30658229Solanum tuberosumTriticum dicoccoides27.649.2685.29102forward
CNT30263014Solanum tuberosumBrassica rapa31.4413.0387.93116forward
CNT30597992Solanum tuberosumFraxinus excelsior58.2761.688.84215forward
CNT30207216Solanum tuberosumHelianthus annuus67.2145.581.45248forward
CNT30718209Solanum tuberosumMalus domestica golden83.4722.8879.87308forward
CNT30626592Solanum tuberosumDaucus carota84.0135.1984.52310forward
CNT30681552Solanum tuberosumTriticum urartu27.6411.584.31102forward
CNT30357143Solanum tuberosumLactuca sativa88.6245.3581.35327forward
CNT30408540Solanum tuberosumPapaver somniferum91.679.3479.88338forward
CNT30571093Solanum tuberosumVitis vinifera47.742.1189.2176forward
CNT30704492Solanum tuberosumPrunus avium42.5516.7284.08157forward
CNT3023343Solanum tuberosumPopulus trichocarpa87.2643.482.3322forward
CNT3036059Solanum tuberosumCucumis melo24.9315.0385.8792forward
CNT30724288Solanum tuberosumLupinus angustifolius81.8426.3581.79302forward
CNT3051042Solanum tuberosumCucumis sativus63.9643.381.36236forward

Expression of CNT3091587

Peptides detected in this lncRNA

>peptide 1 (33 aa)
FLLKMQCSLRSPSEAPPRLLSLQQAMQQRCHSQ*

Sequence

>CNT3091587
CTTTCCTGTTAAAGATGCAGTGTTCTTTACGTTCTCCTTCTGAAGCTCCTCCTCGTCTCCTCTCCCTCCAGCAGGCAATGCAACAGCGTTGTCATAGCCA
GTAGATCCACCCCGTCCCTTTGGGTCAAGGAAGGATGAACCTCTGTATGATGGCACAAGGAACTCACCACTAAAGCTTTCTGGTTTGCCGCTTGCCACAA
GCTGTTTGATAGTAAAGAGGAAGGGCACACGCTCACCACCAGGAAGCTGAACTGTAACAGCAGCATAATCAATTCCATCCTTCTCCTCAAACTTAACAGT
GCCATCAGGAGACACTTCGAATGGTCCCTCAATCTCATCAAGAGTGTAGGTTAAACGTTTTGGAACTCC