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Detailed information on CNT30565923


BLAST search results

BLAST vs Swiss-Prot:
sp|P12853|PSBO_CHLRE, E-value = 4e-76

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30546556Actinidia chinensisIpomoea triloba12.1620.6783.4247forward
CNT30378380Actinidia chinensisArabidopsis thaliana12.1650.178.54247forward
CNT30525147Actinidia chinensisPhaseolus vulgaris20.9269.4481.65425forward
CNT30543700Actinidia chinensisBrassica napus13.6323.6179.42277forward
CNT30234321Actinidia chinensisBrassica oleracea13.6320.5379.42277forward
CNT30263014Actinidia chinensisBrassica rapa13.9331.879.15283forward
CNT30614251Actinidia chinensisArabis alpina5.0736.2784.47103forward
CNT30718320Actinidia chinensisMalus domestica golden4.5328.6684.7892forward
CNT30357143Actinidia chinensisLactuca sativa16.4446.3284.43334forward
CNT30408540Actinidia chinensisPapaver somniferum10.7351.1780.28218forward
CNT30704474Actinidia chinensisPrunus avium7.7321.1384.08157forward
CNT3023343Actinidia chinensisPopulus trichocarpa30.8184.3782.75626forward

Expression of CNT30565923

Peptides detected in this lncRNA

>peptide 1 (53 aa)
MLSKTPITSPLSGLLLVTLRVIFPVDDAVFFMFSLTSSSSSPLPPAGSATALS*

>peptide 2 (43 aa)
TRVEHTRSLGSSHPLEPLPPNQCQMAECFQKHRSPPRSQACFW*

>peptide 3 (51 aa)
LELSIPDPLDLHILWNLCPQISVRWLNAFKNTDHLPALRLAFGDTEGDFPR*

>peptide 4 (64 aa)
MRRHHTETTRAEVARANPATLAASAHFCAKSLKSDCREQVRLALPWSTPDALQTTGLSRTVVLA*

>peptide 5 (30 aa)
MPLLSLAGCMSVAAACSEAAISVSLSPRHKP

>peptide 6 (35 aa)
MLYLPGLKANFSTPPSMVGHWLAVPVPFTSRYVLL*

>peptide 7 (29 aa)
MSCSESHRKLDVSGLPQRLLPRLSMKCRC*

Sequence

>CNT30565923
TACTCGAGTTGAGCATACCAGATCCCTTGGATCTTCACATCCTTTGGAACCTTTGCCCCCAAATCAGTGTCAGATGGCTGAATGCTTTCAAAAACACCGA
TCACCTCCCCGCTCTCAGGCTTGCTTTTGGTGACACTGAGGGTGATTTTCCCCGTTGATGATGCAGTGTTCTTTATGTTTTCCTTAACAAGCTCCTCTTC
ATCCCCTCTCCCTCCTGCCGGCAGTGCAACTGCATTGTCATAACCAGTGGAACCACCCCTTCCCTTTGGGTCCAAGAAAGACGATCCTCTGTATGATGGC
ACGAGAAACTCTCCACTGAAGCTCTCTGGTTTACCCGATGCTACCAGCTGTTTGATAGTAAAGAGGAAGGGCACACGCTCGCCACCGGGCAATTGGACAG
TGACAGCAGCGTAGTCAATTCCATCTTTCTCCTCAAACTTAACTGCACCATCGGAAGAGACTTCGAAGGGTCCCTCGATCTCGGGTCATAAGCTTGGTCT
TTTGGAACTCAGGAGGGGAATTCTTGTTCACACCCTCGGCCTTGACAGTGAATGAGGTGGGTTCCAAACAGAATTTCTTCATGTTGTATTTGCCTGGCTT
GAAGGCAAATTTCTCTACACCACCATCAATGGTTGGGCACTGGTTAGCAGTCCCAGTTCCTTTTACTTCTAGGTATGTCTTGCTCTGAATCTCATCGTAA
GTTAGACGTTTCGGGACTCCCTCAGCGCTTGCTCCCTAGATTGTCCATGAAATGCAGGTGTTAATAATTTCCAACTATGAAAATGAAGACAAAATAAACA
AGTAAAATATATCACTAACCAAACCAGAATAACCAAACCAATTTTAGGATGAAGAACGGGATTTCATAATATGTCGCAACCGTACGCATTGAAATAGAGA
TCTCCATCTGATGCCATAGATGGAGAGGATTGAAATCCCCATCTTATGCATGTTGAAGGCTCAAAACTCTCTTTTCTTCGCTTTGGTGCTTAGAAATAAA
ACATAACACCAAAGGAACCCGGTATATTCTACTAGCAGTAGCAATAAAGCAACAAGGTTTGAGTTCCACCGGTACAAGGTATGGCATATGAGGTTACTTG
GATGAAGCAAACTCACGAACTAGAAATTGTTAGTTAAGAAGTAGAGTTTTGAATCTCTGCTTAGTGCAAGGAGTCAACAGTCACATTTGGAAATTGTTAG
AACTGCTAACCCACATTGCTTATTTGAGCCATCCAAACATAATATATATAATCTAGAATCTATTCCACATATTGCCAATTGGTCTCACGTGGTCCAAGTC
TTTGCCTGTATTATTTCCATTGTTTGTTGTCACCTCCACGTGCATCCGGGATACATGTGCTGGGGATTGTGAGAAGTGTTAGTCAGATATAATTTAGAGG
CTATTACATTTATTGCTAATTAGTTTTAGATTAGAAATCTTAGTAGATTCCGCTTAATAACCAAACAACAATAGTATGAAAAGTGCACTACTTATTTTGG
CTTTCTGATTACTAAATTTCTTCATTAATAATCACAAATATTAGCAAAATAAGACTTATATGCAACTTTGATTCTTTTCTGCTGTTCTTCTGTTTTTTCA
TTTTAGTTCTGATAATCAGCTACTTGTTTACCACAAACAAAATAGTTGAACTTAGCATTGTACTCCATTTAAGCGCTGTAATCAGCTTCTCCCCACACAC
ATGAGAAAGCTTCAAGCTAAATTCTCAACAGAAGCAGCTTGACATGAGAAGGCATCATACCGAGACGACGAGGGCAGAAGTGGCAAGAGCAAATCCAGCG
ACCTTGGCAGCATCAGCACACTTCTGCGCCAAGTCCTTGAAATCAGACTGCAGAGAGCAAGTCAGACTGGCACTGCCCTGGTCGACACCGGATGCCTTGC
AAACGACTGGCCTCAGCCGCACAGTGGTCCTGGCCTGAATGCCACTGCTGAGCTTGGCCGGTTGCATGAGTGTGGCTGCTGCTTGTAGTGAGGCTGCCAT
TTCAGTTTCACTCTCTCCCCGTCACAAACCCT