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Detailed information on CNT30207216


BLAST search results

BLAST vs Swiss-Prot:
sp|P85194|PSBO_HELAN, E-value = 8e-91

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30675069Helianthus annuusSetaria viridis35.665.3280.93194forward
CNT30547255Helianthus annuusIpomoea triloba28.9930.3881.65158forward
CNT30515312Helianthus annuusJuglans regia26.429.2182.64144forward
CNT30700663Helianthus annuusQuercus lobata65.8767.7479.39359forward
CNT30378380Helianthus annuusArabidopsis thaliana20.1822.3181.82110forward
CNT30277684Helianthus annuusChenopodium quinoa35.621.6579.9194forward
CNT30727933Helianthus annuusCorchorus capsularis60.9222.2180.42332forward
CNT30379569Helianthus annuusManihot esculenta73.3945.479400forward
CNT30524993Helianthus annuusPhaseolus vulgaris30.4614.4783.13166forward
CNT30708164Helianthus annuusGlycine max62.5726.7778.01341forward
CNT3042430Helianthus annuusPrunus dulcis28.0714.0581.05153forward
CNT3091587Helianthus annuusSolanum tuberosum45.567.2181.45248forward
CNT30181115Helianthus annuusSecale cereale29.7212.2280.86162forward
CNT30289897Helianthus annuusTriticum aestivum28.9926.4280.38158forward
CNT30221336Helianthus annuusHordeum vulgare29.7223.4480.25162forward
CNT30567886Helianthus annuusActinidia chinensis64.2224.0280.57350forward
CNT3086209Helianthus annuusVigna radiata29.5411.3180.75161forward
CNT30542247Helianthus annuusBrassica napus22.220.382.64121forward
CNT30508746Helianthus annuusSolanum lycopersicum65.8743.3679.39359forward
CNT30147114Helianthus annuusMedicago truncatula28.998.9181.01158forward
CNT30436022Helianthus annuusAegilops tauschii28.9916.0180.38158forward
CNT30659249Helianthus annuusTriticum dicoccoides28.9915.379.75158forward
CNT309111Helianthus annuusZea mays30.0922.3481.71164forward
CNT30718209Helianthus annuusMalus domestica golden39.4515.9779.07215forward
CNT30626592Helianthus annuusDaucus carota65.1440.381.41355forward
CNT30348024Helianthus annuusEragrostis tef30.8327.2381.55168forward
CNT30368337Helianthus annuusSorghum bicolor41.133.6880.36224forward
CNT30356664Helianthus annuusLactuca sativa62.5767.5282.99341forward
CNT30408540Helianthus annuusPapaver somniferum25.1432.1681.02137forward
CNT30704474Helianthus annuusPrunus avium26.7919.6580.82146forward
CNT3023343Helianthus annuusPopulus trichocarpa43.331.8178.39236forward
CNT30584089Helianthus annuusEchinochloa crusgalli30.0913.8782.32164forward
CNT30557734Helianthus annuusPanicum hallii21.4716.6282.05117forward
CNT30725886Helianthus annuusLupinus angustifolius35.058.3482.2191forward
CNT3051042Helianthus annuusCucumis sativus29.5429.5479.5161forward

Expression of CNT30207216

Peptides detected in this lncRNA

>peptide 1 (36 aa)
MTLPTGPRFRQGCMSNGSLAWSFGTRVQSSCLYPRL*

>peptide 2 (65 aa)
FDRSLQLSIPHTLNFHIFRSFGAQIGIRRLNALKHADQLTAFFTFSLASSSSSPRPPAGSATALS*

Sequence

>CNT30207216
CTTTGATCGATCACTCCAACTGAGCATACCACACACCTTGAATTTTCACATCTTTCGGAGCTTTGGCGCCCAAATCGGTATCAGAAGGCTGAATGCTCTC
AAACACGCCGATCAACTCACCGCATTCTTTACATTCTCCTTAGCAAGCTCCTCTTCATCTCCTCGCCCGCCAGCTGGAAGCGCAACCGCATTGTCATAAC
CGGTGGACCCACCTCGGCCCTTTGGGTCAAGGAAAGAAGAGCCTCTGTAAGACGGCACTAGAAACTCCCCACTAAAGTTCTCGGGTGGACCGGTTGCCAC
AAGTTCTTTGACTGTAAACAAGAACGGCACACGCTCACCACCAGGAAGCTGAACGGTCACTGCAGCGTAATCGATACCGTCTTTTTCTTCGAATTTGAGG
GTGCCGTCGGATGACACTTCCAACGGGCCCTCGATTTCGTCAAGGGTGTATGTCAAACGGGTCATTAGCTTGGTCTTTTGGAACTCGGGTGCAGAGTTCT
TGCTTATACCCTCGGCTTTGACCGTGAAAGATGTCGGCTCAAAGC