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Detailed information on CNT30543261


BLAST search results

BLAST vs Swiss-Prot:
sp|P23321|PSBO1_ARATH, E-value = 4e-94

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30535986Brassica napusEucalyptus grandis20.2214.8988.07109forward
CNT30317789Brassica napusCorylus avellana37.1198.5282.5200forward
CNT30547255Brassica napusIpomoea triloba47.3149.0481.18255forward
CNT30515312Brassica napusJuglans regia20.597.184.68111forward
CNT30378380Brassica napusArabidopsis thaliana42.8646.8690.91231forward
CNT30277684Brassica napusChenopodium quinoa95.5557.4879.61515forward
CNT30727931Brassica napusCorchorus capsularis43.2330.0682.83233forward
CNT30379569Brassica napusManihot esculenta22.2613.6283.33120forward
CNT30524993Brassica napusPhaseolus vulgaris66.7931.3980360forward
CNT30710612Brassica napusGlycine max73.2838.2879.75395forward
CNT3042430Brassica napusPrunus dulcis54.552781.29294forward
CNT30221070Brassica napusHordeum vulgare14.8434.4888.7580forward
CNT3086209Brassica napusVigna radiata47.6818.0578.6257forward
CNT30237633Brassica napusBrassica oleracea49.3557.9595.86266forward
CNT30508746Brassica napusSolanum lycopersicum26.3517.1580.99142forward
CNT30147114Brassica napusMedicago truncatula55.4716.8678.6299forward
CNT30612619Brassica napusArabis alpina33.7748.0285.16182forward
CNT30607994Brassica napusGossypium raimondii37.8523.585.29204forward
CNT30718209Brassica napusMalus domestica golden42.4917.0182.97229forward
CNT30355236Brassica napusLactuca sativa37.4823.6581.68202forward
CNT30571093Brassica napusVitis vinifera19.6725.3683.96106forward
CNT3023343Brassica napusPopulus trichocarpa46.7533.9681.75252forward
CNT30319324Brassica napusAsparagus officinalis25.9743.8982.86140forward

Expression of CNT30543261

Peptides detected in this lncRNA

>peptide 1 (93 aa)
WQCNGVVISCGSTTTLWVQEGRATVRRDQEFASEVVWFARGVKLLDCEEERHTLASWKLNSDCSVVDSVFFLEVHASQNKKPRRGLRFRQECR*

>peptide 2 (32 aa)
AMQRRCHILWIHHDPLGPRRTSHGTTGPRICQ*

>peptide 3 (58 aa)
GNATALSYPVDPPRPFGSKKDEPRYDGTKNLPVKLSGLPEASSCLTVKRNGTRSPPGS*

>peptide 4 (70 aa)
MSLVFWNSGGAFLLTLSALTVKEVGSKQNFLPAYLPGLKEKVSEPPSIVGHWLAVPVPLTSMYVLLCISS*

Sequence

>CNT30543261
TGGCAATGCAACGGCGTTGTCATATCCTGTGGATCCACCACGACCCTTTGGGTCCAAGAAGGACGAGCCACGGTACGACGGGACCAAGAATTTGCCAGTG
AAGTTGTCTGGTTTGCCCGAGGCGTCAAGCTGCTTGACTGTGAAGAGGAACGGCACACGCTCGCCTCCTGGAAGCTGAACAGTGACTGCAGCGTAGTCGA
TTCCGTCTTCTTCCTTGAAGTTCACGCTTCCCAAAATAAAAAACCTCGAAGGGGCCTTCGATTTCGTCAAGAGTGTAGGTGAGACGGGTCATGAGCTTGG
TGTTCTGGAACTCAGGAGGTGCGTTCTTGCTAACACTCTCGGCTTTGACGGTGAAGGAAGTAGGCTCGAAGCAGAACTTCTTGCCAGCGTACTTACCTGG
CTTGAAGGAGAAAGTCTCAGAGCCACCGTCAATAGTTGGACACTGGTTGGCAGTTCCGGTTCCTTTGACTTCCATGTATGTCTTGCTCTGTATCTCGTCA
TAAGTGAGTCTCTTCGGAGCTCCCTCTGCACTTGCTCCC