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Detailed information on CNT3036059


BLAST search results

BLAST vs Swiss-Prot:
sp|P12359|PSBO_SPIOL, E-value = 6e-81

BLAST vs NONCODE:
NONCSAT002192, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30317789Cucumis meloCorylus avellana26.3179.3181.99161forward
CNT30546556Cucumis meloIpomoea triloba33.6617.2483.01206forward
CNT30700663Cucumis meloQuercus lobata28.2732.6482.66173forward
CNT30374900Cucumis meloArabidopsis thaliana19.1220.0783.76117forward
CNT30277684Cucumis meloChenopodium quinoa60.6241.4184.64371forward
CNT30727931Cucumis meloCorchorus capsularis38.0730.0684.98233forward
CNT30379731Cucumis meloManihot esculenta62.5834.581.72383forward
CNT30524993Cucumis meloPhaseolus vulgaris61.1132.6181.28374forward
CNT30710612Cucumis meloGlycine max58.8234.8882.5360forward
CNT3042430Cucumis meloPrunus dulcis53.9230.381.21330forward
CNT3091587Cucumis meloSolanum tuberosum15.0324.9385.8792forward
CNT30567880Cucumis meloActinidia chinensis62.0916.6882.11380forward
CNT3086209Cucumis meloVigna radiata62.5826.981.72383forward
CNT30238377Cucumis meloBrassica oleracea41.0146.7479.68251forward
CNT30508746Cucumis meloSolanum lycopersicum61.1145.1781.28374forward
CNT30147114Cucumis meloMedicago truncatula60.6220.9282.48371forward
CNT30259787Cucumis meloBrassica rapa19.4421.7982.35119forward
CNT30612678Cucumis meloArabis alpina12.0930.4586.4974forward
CNT30597992Cucumis meloFraxinus excelsior28.2749.5782.66173forward
CNT30607994Cucumis meloGossypium raimondii36.1125.4682.35221forward
CNT30718209Cucumis meloMalus domestica golden55.2325.1181.07338forward
CNT30626592Cucumis meloDaucus carota41.0128.4982.47251forward
CNT30621504Cucumis meloCajanus cajan34.1513.2685.17209forward
CNT30356640Cucumis meloLactuca sativa58.0153.381.13355forward
CNT30571041Cucumis meloVitis vinifera29.7450.1486.81182forward
CNT30704492Cucumis meloPrunus avium60.9539.7282.04373forward
CNT3023343Cucumis meloPopulus trichocarpa35.6229.3885.32218forward
CNT30724288Cucumis meloLupinus angustifolius61.1132.6479.95374forward
CNT3051042Cucumis meloCucumis sativus39.0543.8598.33239forward

Expression of CNT3036059

Peptides detected in this lncRNA

>peptide 1 (32 aa)
MSLVFWNSGGEFLLTPSALTVKEVGSRQNFLA*

>peptide 2 (34 aa)
HQLFDGEEEWDTLTSRQLDSDSSIVNSIFLLKLD*

Sequence

>CNT3036059
GCCACCAATTGTTTGATGGTGAAGAGGAATGGGACACGCTCACCTCCCGGCAACTGGACAGTGACAGCAGCATAGTCAATTCCATCTTTCTCCTCAAACT
TGATTGAACCATCAGCACCAACTTCAAAGGGTCCTTCAATCTCGTCTAGTGTGTAAGTTAGACGAGTCATGAGCTTGGTGTTTTGGAATTCTGGTGGGGA
GTTCTTGCTCACTCCTTCAGCCTTGACAGTGAAAGAAGTTGGCTCAAGACAGAATTTCTTGGCTTGATATTTGCCTGCCTTGAAGGCAAATGAATCAACT
CCTCCCTCAATGGTTGGGCATTGGTTAGCTGTTCCAGTTCCCTTAACTTCAAGGTATGTCTTGCTCTGAATTTCATCAAAGGTGAGTCTAGCTCCGGCAG
ATTCAAGGCCAAAAGCTTTAGAAAGGGATTGAGAAGATCTGAGTTGAGAGGTGGTAGTCCTTGAGGCCAACTTGGAGGGTTGCATAAGCGTAGCCGCGGT
GGCGTGTACTGAAGCCGCCATTGTTGTGTAGAGTTTTTCTCCTCTCTGGATTGTGAGTAAGAGAGCAGAAATGAAATTTTGTCCGGCGAATGATACCGAA
ACTATAACGGCC