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Detailed information on CNT30244672


BLAST search results

BLAST vs Swiss-Prot:
sp|Q40459|PSBO_TOBAC, E-value = 5e-115

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30674885Avena sativaSetaria viridis23.5549.1690.29175forward
CNT30535986Avena sativaEucalyptus grandis60.361.283.71448forward
CNT30317789Avena sativaCorylus avellana19.6571.9284.25146forward
CNT30515361Avena sativaJuglans regia35.459.579.09263forward
CNT30374900Avena sativaArabidopsis thaliana29.0737.0581.94216forward
CNT30727931Avena sativaCorchorus capsularis23.6922.7179.55176forward
CNT3042430Avena sativaPrunus dulcis22.8815.6181.18170forward
CNT3091254Avena sativaSolanum tuberosum36.3417.8780.37270forward
CNT30181115Avena sativaSecale cereale61.3734.3993.86456forward
CNT30290560Avena sativaTriticum aestivum95.4269.7891.96709forward
CNT30386646Avena sativaTriticum turgidum95.4253.7991.54709forward
CNT30567883Avena sativaActinidia chinensis35.812.3477.82266forward
CNT30592113Avena sativaMusa acuminata60.361.5485.27448forward
CNT30543700Avena sativaBrassica napus21.413.5581.76159forward
CNT30234321Avena sativaBrassica oleracea21.411.7981.76159forward
CNT30436551Avena sativaAegilops tauschii95.1574.7493.21707forward
CNT30658638Avena sativaTriticum dicoccoides61.3736.7793.64456forward
CNT30259787Avena sativaBrassica rapa20.8628.3982.58155forward
CNT3010855Avena sativaZea mays50.6167.0289.63376forward
CNT30607994Avena sativaGossypium raimondii34.7229.7279.84258forward
CNT30681118Avena sativaTriticum urartu61.3737.9793.42456forward
CNT30342706Avena sativaEragrostis tef91.1286.2490.1677forward
CNT30477612Avena sativaArabidopsis halleri24.937.1581.08185forward
CNT30368483Avena sativaSorghum bicolor60.9737.3892.05453forward
CNT30621504Avena sativaCajanus cajan22.8810.7981.18170forward
CNT30408540Avena sativaPapaver somniferum14.425.1282.24107forward
CNT30704474Avena sativaPrunus avium20.5920.5981.7153forward
CNT3023343Avena sativaPopulus trichocarpa22.0722.179.88164forward
CNT30319039Avena sativaAsparagus officinalis15.7549.5885.47117forward
CNT30121175Avena sativaCitrus clementina22.0735.9680.49164forward
CNT30584070Avena sativaEchinochloa crusgalli61.7838.9690.2459forward
CNT30497590Avena sativaDigitaria exilis46.0338.8690.35342forward
CNT30557822Avena sativaPanicum hallii34.3236.5389.8255forward
CNT30115348Avena sativaEutrema salsugineum21.423.5980.5159forward

Expression of CNT30244672

Peptides detected in this lncRNA

>peptide 1 (81 aa)
MSLVFWKAGGSFFWMPSALTVKEVGSRQNFLTSYLPALKGKVSTPPSMVGHWFAVPVPLTSMYVLLWISSKVSLLGAPSALA

>peptide 2 (95 aa)
MPSFSSNLRVPSAGHELGLLEGRRLVLLDALRLDGEGGGLEAELLDLVLAGLEREGVDAAVDGRALVCRAGTLDLHVRLALDLVEGEPFGRSLGAR

>peptide 3 (47 aa)
MTSPVSGLLLVTLRVMLPVDDEAFLTFSLASSSSSPLPPAGSATALS*

>peptide 4 (65 aa)
QRYRRLIQSALGLELRVPHTLDLDILGRLGAQVGVGRLHALEDADDLAGFWVALGNAEGDVARGR*

Sequence

>CNT30244672
CGCAAAGGTACCGTCGCTTAATTCAGTCTGCTCTAGGACTCGAGCTGCGCGTACCACACACCCTGGATCTTGACATCCTTGGGCGCCTTGGCGCCCAGGT
CGGTGTCGGACGGCTGCACGCTCTCGAAGACGCCGATGACCTCGCCGGTTTCTGGGTTGCTCTTGGTAACGCTGAGGGTGATGTTGCCCGTGGACGATGA
GGCGTTCTTGACGTTCTCCTTGGCGAGCTCCTCCTCGTCTCCCCTTCCTCCGGCAGGCAGCGCCACGGCGTTGTCGTAGCCAGTAGAGCCACCACGGCCC
TTTGGGTCCAGGAAAGATGAGCCCCTGTAGCTGGGCACGAGGAATGGCCCGCTGAAGCTCTCGGGCTTGCCGGTGGCGACGAGCTGCTTGACGGTGAAGA
GGAATGGCACGCGCTCTCCTCCAGGGAGCTGCACGGTGACGGCGGCGTAGTCGATGCCGTCCTTCTCCTCGAACTTGAGGGTTCCGTCGGCGGGTCATGA
GCTTGGTCTTCTGGAAGGCCGGCGGCTCGTTCTTCTGGATGCCCTCCGCCTTGACGGTGAAGGAGGTGGGCTCGAGGCAGAACTTCTTGACCTCGTACTT
GCCGGCCTTGAAAGGGAAGGTGTCGACGCCGCCGTCGATGGTAGGGCACTGGTTTGCCGTGCCGGTACCCTTGACCTCCATGTACGTCTTGCTCTGGATC
TCGTCGAAGGTGAGCCTTTTGGGCGCTCCCTCGGCGCTCGCGC