« Back to Vigna radiata search


Detailed information on CNT3086209


BLAST search results

BLAST vs Swiss-Prot:
sp|P14226|PSBO_PEA, E-value = 1e-102

BLAST vs NONCODE:
NONGMAT000837, E-value = 4e-111

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30675069Vigna radiataSetaria viridis14.8271.0480.09211forward
CNT30535986Vigna radiataEucalyptus grandis14.9629.184.51213forward
CNT30317789Vigna radiataCorylus avellana11.4580.382.21163forward
CNT30546556Vigna radiataIpomoea triloba17.4220.7583.47248forward
CNT30515294Vigna radiataJuglans regia9.6920.3287.68138forward
CNT30377797Vigna radiataArabidopsis thaliana4.5625.6989.2365forward
CNT30277684Vigna radiataChenopodium quinoa25.4940.5184.57363forward
CNT30727932Vigna radiataCorchorus capsularis27.2529.7584.28388forward
CNT30379731Vigna radiataManihot esculenta31.3240.1881.84446forward
CNT30629052Vigna radiataVigna unguiculata11.6629.7595.78166forward
CNT3042430Vigna radiataPrunus dulcis24.3731.8681.56347forward
CNT3091587Vigna radiataSolanum tuberosum10.7441.4686.27153forward
CNT30287195Vigna radiataTriticum aestivum26.6942.8977.63380forward
CNT30221070Vigna radiataHordeum vulgare6.6740.9584.2195forward
CNT30385696Vigna radiataTriticum turgidum6.6723.4685.2695forward
CNT30567880Vigna radiataActinidia chinensis32.7920.582.23467forward
CNT30592113Vigna radiataMusa acuminata12.5724.5982.12179forward
CNT30543261Vigna radiataBrassica napus18.0547.6878.6257forward
CNT30238377Vigna radiataBrassica oleracea17.4246.1879.44248forward
CNT30508746Vigna radiataSolanum lycopersicum29.7151.0982.03423forward
CNT30147114Vigna radiataMedicago truncatula34.6227.8183.16493forward
CNT30436022Vigna radiataAegilops tauschii26.6938.577.63380forward
CNT30657734Vigna radiataTriticum dicoccoides26.6942.0477.63380forward
CNT30259787Vigna radiataBrassica rapa16.9944.3278.93242forward
CNT30612678Vigna radiataArabis alpina4.7827.9886.7668forward
CNT30597992Vigna radiataFraxinus excelsior14.8960.7484.43212forward
CNT309111Vigna radiataZea mays12.8524.9380.87183forward
CNT30607994Vigna radiataGossypium raimondii18.5430.4182.95264forward
CNT30207216Vigna radiataHelianthus annuus11.3129.5480.75161forward
CNT30718209Vigna radiataMalus domestica golden30.4132.1780.6433forward
CNT30626592Vigna radiataDaucus carota27.9545.1879.9398forward
CNT30681647Vigna radiataTriticum urartu5.5521.0786.0879forward
CNT30342712Vigna radiataEragrostis tef18.2629.8979.62260forward
CNT30477612Vigna radiataArabidopsis halleri8.2923.6982.2118forward
CNT30368337Vigna radiataSorghum bicolor16.7135.7979.83238forward
CNT30356640Vigna radiataLactuca sativa21.9146.8580.77312forward
CNT30571041Vigna radiataVitis vinifera12.3648.4885.8176forward
CNT30704492Vigna radiataPrunus avium25.4238.5581.49362forward
CNT3023343Vigna radiataPopulus trichocarpa18.5435.5883.71264forward
CNT3036059Vigna radiataCucumis melo26.962.5881.72383forward
CNT30584058Vigna radiataEchinochloa crusgalli26.6930.0278.95380forward
CNT30557734Vigna radiataPanicum hallii17.9836.3679.69256forward
CNT30724288Vigna radiataLupinus angustifolius34.0642.3284.54485forward

Expression of CNT3086209

Peptides detected in this lncRNA

>peptide 1 (51 aa)
MSPLHLQWLDTGLLFQSPSLPGRSCSGFRRRLAALEHLQHLPPEGLIAQSN*

>peptide 2 (55 aa)
MMWDFPTNNKVYKFFGIENRKYGEVHVTVNDRLVEKKSTYRDNKSRVLKIGVKGA*

>peptide 3 (42 aa)
GSKKELPRYDGTRNCPPKLSGFPDATNCLMVKRKGTRSPPGS*

>peptide 4 (44 aa)
MMNIHHKTKLNYWRIISSMVSVQHLSTTSLIKWTVTTYKPEMFI*

>peptide 5 (32 aa)
MNMSALRPNLELYYDVGLPNKQQSIQVFWYRK*

>peptide 6 (62 aa)
MSFVFWNSNGAFLATPSAFTVNDVGSRHNFLALYFPALKANESTPPSMVGHWFAVPVPFTSR*

Sequence

>CNT3086209
GGGGTCCAAGAAAGAGCTTCCACGGTATGATGGCACCAGAAACTGCCCCCCAAAGCTCTCTGGCTTCCCTGACGCCACCAACTGCTTGATGGTGAAGAGG
AAGGGCACACGTTCGCCACCAGGTAGCTGAACCGTCACGGCTGCGTAGTCAATGCCATCTTTCTCCTCAAACTTGACTGTGCCATCGGGAGACACCTCAA
AGGGTCCCTCGATCTCATCAAGAGTGTAGGTCAAACGTGTCATGAGCTTTGTGTTTTGGAACTCTAATGGGGCGTTCTTGGCCACACCCTCAGCCTTCAC
TGTGAATGACGTAGGCTCAAGGCATAACTTCTTGGCATTGTATTTTCCTGCCTTGAAGGCAAATGAGTCCACTCCACCTTCAATGGTTGGACACTGGTTT
GCTGTTCCAGTCCCCTTCACTTCCAGGTAGGTCTTGCTCTGGATTTCGTCGAAGGTTAGCCGCTTTGGAACACCTTCAGCACTTGCCCCCTGAAGGTTTA
ATAGCTCAGTCAAATTAGTTCTTTAAACATACAACATCATTTTTGTTCACAACACCTTTTCTAAAATACCCATCACCAGCATTAGCTCTTTCTAAACAAT
GTGATCTGGTCAATTCTAATAAATTTCATCCTATAATAAAAATAAATAAATTTAAAATGAGTGTATTAGGACGGTGAAACTAGTCTTCATAACATGTTAC
ACGAGGACTAACTTGACCGATGAATATTCTAAATTGGGATTTACAAGGTTAATTCCTATGCTTGGCATTGGCAGTGGCTTGGCTTCATAAATCAGAAGAT
ATCTTATGATGAATATTCATCACAAGACAAAATTAAACTACTGGCGAATAATATCATCGATGGTTTCTGTGCAACATTTGTCAACCACATCCTTAATTAA
ATGGACTGTTACTACTTACAAGCCAGAGATGTTCATATGATGTATCCTACTAAAACGTAAAGAAGAAAAGAAAAAGCATTCAGCATTCGATAAGAAAGAT
GAACATGAGTGCTCTTAGGCCTAACCTTGAACTTTACTATGATGTGGGACTTCCCAACAAACAACAAAGTATACAAGTTTTTTGGTATAGAAAATAGAAA
ATATGGGGAAGTTCATGTAACAGTTAATGATAGATTGGTAGAAAAGAAGAGCACATACAGAGACAACAAGAGCAGAGTCCTTAAGATCGGTGTGAAGGGA
GCATGAAAGCTTAGCTCCAGCAGGTTCCAAACCAAAAGCCTTTGAAATGGAGTGAGGGGACTTTAGCTGCAAAGTGTTGGTTCTGCCCAACTTGGTGGCT
TGCATGAAAGTAGCTGCTGGTTGTAGTGACGCTGCCATTGCCACCAATTCCTCAGTGTTTCTGTGTGTGAGGTCTTGAAAGAAAGCAGTTTGTAAGTGTT
TTTGGAGAGTGGAGAGAGTAGAAT