« Back to Medicago truncatula search


Detailed information on CNT30147240


BLAST search results

BLAST vs Swiss-Prot:
sp|P14226|PSBO_PEA, E-value = 3e-74

BLAST vs NONCODE:
NONGMAT000837, E-value = 1e-77

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30378380Medicago truncatulaArabidopsis thaliana66.9450.178.95247forward
CNT30542247Medicago truncatulaBrassica napus22.4913.9386.7583forward
CNT30237252Medicago truncatulaBrassica oleracea22.4911.3986.7583forward
CNT30242448Medicago truncatulaAvena sativa22.4915.5784.3483forward
CNT30263014Medicago truncatulaBrassica rapa22.499.3386.7583forward
CNT30357143Medicago truncatulaLactuca sativa65.0433.2982.92240forward
CNT3023343Medicago truncatulaPopulus trichocarpa68.5634.186.56253forward
CNT30584070Medicago truncatulaEchinochloa crusgalli22.497.0584.3483forward

Expression of CNT30147240

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MMQHSCCFPFQVLLHLLFLQLAMQLHCHNR*

>peptide 2 (32 aa)
SAFIDDAALLLFSFPSSSSSPLPPAGNATALS*

Sequence

>CNT30147240
GTTCTGCTTTCATAGATGATGCAGCACTCTTGTTGTTTTCCTTTCCAAGTTCTTCTTCATCTCCTCTTCCTCCAGCTGGCAATGCAACTGCATTGTCATA
ACCGGTAGATGCACCTCTTCCCTTTGGGTCCAAGAAAGAGCTTCCTCTGTATGATGGTACCAAATACTCACCACTGAAGCTCTCTGGCTTCCCTGATGCT
ACCAATTGTTTGATGGTGAAAAGGAATGGCACACGCTCACCACCGGGAAGCTGAACTGTGACTGCGGCGTAGTCAATGCCATCTTTCTCCTCAAATTTGA
CAGAGCCGTCTGATGAAACCTCAAAGGGTCCTTCAATCTCGTCGAGGGTGTAGATATAATACTGACAGT