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Detailed information on CNT30224124

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONCQUT004692, E-value = 2e-75

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30672466	Hordeum vulgare	Setaria viridis	98.99	82.12	96.26	294	forward
CNT30520930	Hordeum vulgare	Setaria italica	58.59	63.74	94.83	174	forward
CNT30546688	Hordeum vulgare	Ipomoea triloba	98.99	68.37	88.78	294	forward
CNT30378189	Hordeum vulgare	Arabidopsis thaliana	91.92	66.1	89.01	273	forward
CNT30727589	Hordeum vulgare	Corchorus capsularis	99.66	87.06	89.86	296	forward
CNT30380192	Hordeum vulgare	Manihot esculenta	100	13.02	88.89	297	forward
CNT30195181	Hordeum vulgare	Pisum sativum	92.59	58.02	89.45	275	forward
CNT30709121	Hordeum vulgare	Glycine max	50.84	37.66	86.09	151	forward
CNT30160107	Hordeum vulgare	Pistacia vera	98.99	65.77	89.12	294	forward
CNT30637620	Hordeum vulgare	Capsicum annuum	94.95	14.69	88.65	282	forward
CNT3093993	Hordeum vulgare	Solanum tuberosum	99.66	56.7	87.5	296	forward
CNT30288144	Hordeum vulgare	Triticum aestivum	58.25	46.76	94.22	173	forward
CNT30386294	Hordeum vulgare	Triticum turgidum	56.57	45.65	94.05	168	forward
CNT30562819	Hordeum vulgare	Actinidia chinensis	50.51	29.76	90.67	150	forward
CNT30590647	Hordeum vulgare	Musa acuminata	48.82	46.47	89.66	145	forward
CNT3084119	Hordeum vulgare	Vigna radiata	99.66	16.63	85.81	296	forward
CNT30233912	Hordeum vulgare	Brassica oleracea	34.68	45.98	92.23	103	forward
CNT30509848	Hordeum vulgare	Solanum lycopersicum	77.44	100	88.26	230	forward
CNT30658093	Hordeum vulgare	Triticum dicoccoides	62.96	42.79	94.12	187	forward
CNT30614135	Hordeum vulgare	Arabis alpina	98.65	18.78	89.42	293	forward
CNT30608684	Hordeum vulgare	Gossypium raimondii	79.8	56.29	88.61	237	forward
CNT3067093	Hordeum vulgare	Leersia perrieri	30.98	20.58	98.91	92	forward
CNT30646927	Hordeum vulgare	Rosa chinensis	48.82	43.15	91.72	145	forward
CNT30689637	Hordeum vulgare	Triticum urartu	100	30.43	94.61	297	forward
CNT30721628	Hordeum vulgare	Triticum spelta	60.61	54.38	95.56	180	forward
CNT30338600	Hordeum vulgare	Eragrostis tef	95.29	58.96	92.93	283	forward
CNT30480842	Hordeum vulgare	Arabidopsis halleri	49.83	30.39	90.54	148	forward
CNT30368333	Hordeum vulgare	Sorghum bicolor	65.66	72.49	93.33	195	forward
CNT30570869	Hordeum vulgare	Vitis vinifera	98.99	88.29	89.46	294	forward
CNT30704438	Hordeum vulgare	Prunus avium	44.44	54.77	88.64	132	forward
CNT30644460	Hordeum vulgare	Cannabis sativa	68.69	68.23	88.24	204	forward
CNT3031228	Hordeum vulgare	Theobroma cacao	37.37	44.76	90.09	111	forward
CNT30323623	Hordeum vulgare	Asparagus officinalis	53.87	51.28	83.75	160	forward
CNT30120974	Hordeum vulgare	Citrus clementina	99.66	48.84	90.2	296	forward
CNT30101083	Hordeum vulgare	Oryza rufipogon	94.95	52.81	94.68	282	forward
CNT30116334	Hordeum vulgare	Oryza nivara	85.52	41.64	94.49	254	forward
CNT30594407	Hordeum vulgare	Eragrostis curvula	94.95	99.3	95.39	282	forward
CNT30726347	Hordeum vulgare	Lupinus angustifolius	98.99	61.64	88.1	294	forward
CNT3039699	Hordeum vulgare	Marchantia polymorpha	41.41	14.45	88.62	123	forward

Expression of CNT30224124

Peptides detected in this lncRNA

>peptide 1 (98 aa)
YLVAAADHLLHSKSESKEGMLAGLAILGDTGLKTTSGGVNDEHSTVSLGGTRNHVLDEVTVTRGINDGAVVLGGLELPQGNINGDTPLTLSLELVKHPG

>peptide 2 (60 aa)
TLLQQQIICFTPRVKARRACSRVWPSLEIPASKPPVVESMMSTAQSAWEVPVIMFLMKSR*

Sequence

>CNT30224124
TACCTTGTTGCAGCAGCAGATCATCTGCTTCACTCCAAGAGTGAAAGCAAGGAGGGCATGCTCGCGGGTCTGGCCATCCTTGGAGATACCGGCCTCAAAA
CCACCAGTGGTGGAGTCAATGATGAGCACAGCACAGTCAGCCTGGGAGGTACCCGTAATCATGTTCTTGATGAAGTCACGGTGACCAGGGGCATCAATGA
CGGTGCAGTAGTACTTGGTGGTCTCGAACTTCCACAGGGCAATATCAATGGTGATACCCCTCTCACGCTCAGCCTTGAGCTTGTCAAGCACCCAGGC