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Detailed information on CNT30562819


BLAST search results

BLAST vs Swiss-Prot:
sp|P25698|EF1A_SOYBN, E-value = 9e-73

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672934Actinidia chinensisSetaria viridis58.7353.6286.82296forward
CNT30520930Actinidia chinensisSetaria italica16.2730.0489.0282forward
CNT30546688Actinidia chinensisIpomoea triloba58.9369.0788.89297forward
CNT30380125Actinidia chinensisManihot esculenta65.6727.6193.05331forward
CNT30195181Actinidia chinensisPisum sativum65.2869.4188.15329forward
CNT30712097Actinidia chinensisGlycine max65.4827.6687.88330forward
CNT30160107Actinidia chinensisPistacia vera60.5268.2389.51305forward
CNT3093993Actinidia chinensisSolanum tuberosum62.360.1588.54314forward
CNT30288144Actinidia chinensisTriticum aestivum65.2888.9289.06329forward
CNT30224124Actinidia chinensisHordeum vulgare29.7650.5190.67150forward
CNT30386294Actinidia chinensisTriticum turgidum65.2889.489.06329forward
CNT30233912Actinidia chinensisBrassica oleracea43.6598.2189.09220forward
CNT30509848Actinidia chinensisSolanum lycopersicum17.8639.1387.7890forward
CNT30658093Actinidia chinensisTriticum dicoccoides65.2875.2989.06329forward
CNT30608684Actinidia chinensisGossypium raimondii66.2779.3386.23334forward
CNT3067093Actinidia chinensisLeersia perrieri48.6154.8187.76245forward
CNT30646927Actinidia chinensisRosa chinensis62.393.4586.31314forward
CNT30625732Actinidia chinensisDaucus carota16.0737.8590.1281forward
CNT30689637Actinidia chinensisTriticum urartu65.2833.7189.67329forward
CNT30721809Actinidia chinensisTriticum spelta50.416.8388.58254forward
CNT30338600Actinidia chinensisEragrostis tef65.4868.7587.27330forward
CNT30363108Actinidia chinensisSorghum bicolor65.2841.1285.41329forward
CNT30570869Actinidia chinensisVitis vinifera36.7155.5690.81185forward
CNT30704438Actinidia chinensisPrunus avium16.6734.8591.6784forward
CNT30645139Actinidia chinensisCannabis sativa45.0482.2592.95227forward
CNT3031228Actinidia chinensisTheobroma cacao22.4245.5688.5113forward
CNT30323623Actinidia chinensisAsparagus officinalis19.4431.4182.6598forward
CNT30120974Actinidia chinensisCitrus clementina66.0754.9588.59333forward
CNT30101083Actinidia chinensisOryza rufipogon61.958.4387.18312forward
CNT30116334Actinidia chinensisOryza nivara61.951.1587.18312forward
CNT30726347Actinidia chinensisLupinus angustifolius65.4869.1887.27330forward

Expression of CNT30562819

Peptides detected in this lncRNA

>peptide 1 (57 aa)
VSLGCPSNHVLNKVTVTRSINDCAVVLGGLEFPQSNINGDTTFTLSLEFVQNPGIFE*

>peptide 2 (44 aa)
MVIPRSRSALSLSKTQAYLNDLLFISAASFSNLSITRLSIPPSL*

>peptide 3 (31 aa)
MPSCGGLARVDMANDNNADVNFLLAHYKPLE*

Sequence

>CNT30562819
GTCAGCCTGGGATGTCCCAGTAATCATGTTCTTAATAAAGTCACGGTGACCAGGAGCATCAATGACTGTGCAGTAGTACTTGGTGGTCTCGAATTTCCAC
AAAGCAATATCAATGGTGATACCACGTTCACGCTCAGCCTTGAGTTTGTCCAAAACCCAGGCATATTTGAATGACCTCTTGTTCATTTCAGCAGCTTCCT
TCTCAAACCTCTCAATCACACGCTTGTCAATTCCTCCAAGCTTGTAAATGAGATGCCCAGTTGTGGTGGACTTGCCAGAGTCGACATGGCCAATGACAAC
AATGCTGATGTGAACTTTCTCCTTGCCCATTATAAACCTCTAGAGTAGAACTGCAACAGAAACTAAGCAATGTAGAGATTCAAGAGGGAGGCCGCGAAAC
CCTATCCCGCGGAGATGCTAGAGCGAAAATGAGAGAGAGCAGAGCAGTAGTGGGGTGAGGTGAGTGGGGTGAGGTTTGTTTTTATAGCCGAACCGACCTA
TAGA