« Back to Triticum dicoccoides search


Detailed information on CNT30658093


BLAST search results

BLAST vs Swiss-Prot:
sp|P34824|EF1A1_HORVU, E-value = 1e-78

BLAST vs NONCODE:
NONMEST004097, E-value = 3e-118

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672934Triticum dicoccoidesSetaria viridis73.2357.9791.25320forward
CNT30520930Triticum dicoccoidesSetaria italica25.440.6689.19111forward
CNT30546688Triticum dicoccoidesIpomoea triloba73.9175.1287.31323forward
CNT30698284Triticum dicoccoidesQuercus lobata30.6646.8588.06134forward
CNT30378189Triticum dicoccoidesArabidopsis thaliana37.9940.1990.96166forward
CNT30195181Triticum dicoccoidesPisum sativum81.4675.1187.64356forward
CNT30712097Triticum dicoccoidesGlycine max76.6628.0886.57335forward
CNT30160107Triticum dicoccoidesPistacia vera75.5173.8389.7330forward
CNT3093993Triticum dicoccoidesSolanum tuberosum81.2468.0188.45355forward
CNT30288144Triticum dicoccoidesTriticum aestivum84.67100100370forward
CNT30224124Triticum dicoccoidesHordeum vulgare42.7962.9694.12187forward
CNT30386294Triticum dicoccoidesTriticum turgidum84.21100100368forward
CNT30562819Triticum dicoccoidesActinidia chinensis75.2965.2889.06329forward
CNT30590647Triticum dicoccoidesMusa acuminata31.1243.5988.24136forward
CNT30233912Triticum dicoccoidesBrassica oleracea50.3498.2189.55220forward
CNT30509848Triticum dicoccoidesSolanum lycopersicum28.1553.4887.8123forward
CNT30312075Triticum dicoccoidesCamelina sativa48.5137.7291.04212forward
CNT30450104Triticum dicoccoidesSaccharum spontaneum21.7422.7891.5895forward
CNT30608684Triticum dicoccoidesGossypium raimondii77.3580.2986.39338forward
CNT30218533Triticum dicoccoidesKalanchoe fedtschenkoi25.8621.7387.61113forward
CNT3067093Triticum dicoccoidesLeersia perrieri59.7358.3994.25261forward
CNT30646927Triticum dicoccoidesRosa chinensis72.3194.0587.66316forward
CNT30625732Triticum dicoccoidesDaucus carota24.495086.92107forward
CNT30689637Triticum dicoccoidesTriticum urartu87.6439.2497.91383forward
CNT30338600Triticum dicoccoidesEragrostis tef82.387591.94360forward
CNT30480842Triticum dicoccoidesArabidopsis halleri64.0757.4987.14280forward
CNT30363108Triticum dicoccoidesSorghum bicolor78.724390.12344forward
CNT30483063Triticum dicoccoidesChara braunii26.3250.8886.09115forward
CNT30423787Triticum dicoccoidesPapaver somniferum76.6617.9886.87335forward
CNT30570869Triticum dicoccoidesVitis vinifera51.7267.8786.28226forward
CNT30704438Triticum dicoccoidesPrunus avium20.5937.349090forward
CNT30645139Triticum dicoccoidesCannabis sativa53.7885.1490.21235forward
CNT3031228Triticum dicoccoidesTheobroma cacao25.444.7687.39111forward
CNT30323623Triticum dicoccoidesAsparagus officinalis27.9239.185.25122forward
CNT30120727Triticum dicoccoidesCitrus clementina81.2464.5589.01355forward
CNT30101083Triticum dicoccoidesOryza rufipogon81.6966.8591.6357forward
CNT30585568Triticum dicoccoidesEchinochloa crusgalli22.6519.390.9199forward
CNT30116334Triticum dicoccoidesOryza nivara81.6958.5291.88357forward
CNT30594327Triticum dicoccoidesEragrostis curvula59.7373.7391.57261forward
CNT30726402Triticum dicoccoidesLupinus angustifolius81.4674.6387.92356forward

Expression of CNT30658093

Peptides detected in this lncRNA

>peptide 1 (61 aa)
MTVHEYLVVSNFHRAISMVIPLSRSALSLSSTQAYLKDLLFISAASFSNLSITRLSMPPSL*

>peptide 2 (97 aa)
GVNDKHSTISLGGTSDHVLDEITVTRSINDSARVLGGLELPQSNINGDTSLTLSLELVKHPGVLERPLVHLSGFLLEPLDHTLVNASKLVDEVASRG*

>peptide 3 (40 aa)
MRWPVVVDLPESTWPMTTMLMWIFSFPMAAGAVNYLHRHN*

Sequence

>CNT30658093
TGGAGTCAATGATAAGCACAGCACAATCAGCCTGGGAGGTACCAGTGATCATGTTCTTGATGAAATCACGGTGACCAGGAGCATCAATGACAGTGCACGA
GTACTTGGTGGTCTCGAACTTCCACAGAGCAATATCAATGGTGATACCTCTCTCACGCTCAGCCTTGAGCTTGTCAAGCACCCAGGCGTACTTGAAAGAC
CTCTTGTTCATCTCAGCGGCTTCCTTCTCGAACCTCTCGATCACACGCTTGTCAATGCCTCCAAGCTTGTAGATGAGGTGGCCAGTCGTGGTTGACTTGC
CAGAGTCGACATGGCCAATGACCACAATGCTGATGTGGATCTTCTCCTTTCCCATGGCTGCTGGAGCTGTTAACTACCTGCATAGACACAATTAGGGGTG
GTGATATGAAGGACGGAGGGGCGATGGGGTCAAAGCC