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Detailed information on CNT30160107

BLAST search results

BLAST vs Swiss-Prot:
sp|Q41803|EF1A_MAIZE, E-value = 3e-101

BLAST vs NONCODE:
NONMEST004097, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30672466	Pistacia vera	Setaria viridis	70.02	87.43	90.1	313	forward
CNT30520930	Pistacia vera	Setaria italica	36.69	60.07	90.85	164	forward
CNT30546688	Pistacia vera	Ipomoea triloba	95.3	99.07	90.61	426	forward
CNT30698284	Pistacia vera	Quercus lobata	24.83	38.81	93.69	111	forward
CNT30378189	Pistacia vera	Arabidopsis thaliana	61.07	66.1	88.28	273	forward
CNT30380192	Pistacia vera	Manihot esculenta	97.54	19.11	93.35	436	forward
CNT30195181	Pistacia vera	Pisum sativum	97.54	91.98	88.99	436	forward
CNT30637620	Pistacia vera	Capsicum annuum	61.07	14.22	89.38	273	forward
CNT3093993	Pistacia vera	Solanum tuberosum	97.32	83.33	88.97	435	forward
CNT30288144	Pistacia vera	Triticum aestivum	71.59	86.49	89.38	320	forward
CNT30224124	Pistacia vera	Hordeum vulgare	65.77	98.99	89.12	294	forward
CNT30386294	Pistacia vera	Triticum turgidum	69.35	84.24	89.68	310	forward
CNT30562819	Pistacia vera	Actinidia chinensis	68.23	60.52	89.51	305	forward
CNT30590647	Pistacia vera	Musa acuminata	31.54	45.19	87.23	141	forward
CNT30233912	Pistacia vera	Brassica oleracea	48.77	97.32	89.91	218	forward
CNT30509848	Pistacia vera	Solanum lycopersicum	49.66	96.52	89.19	222	forward
CNT30658093	Pistacia vera	Triticum dicoccoides	73.83	75.51	89.7	330	forward
CNT30608684	Pistacia vera	Gossypium raimondii	85.46	90.74	89.53	382	forward
CNT3067093	Pistacia vera	Leersia perrieri	53.02	53.02	89.87	237	forward
CNT30646927	Pistacia vera	Rosa chinensis	63.09	83.93	90.78	282	forward
CNT30625732	Pistacia vera	Daucus carota	31.1	64.95	87.77	139	forward
CNT30689637	Pistacia vera	Triticum urartu	97.76	44.77	89.02	437	forward
CNT30721807	Pistacia vera	Triticum spelta	53.91	26.81	90.87	241	forward
CNT30338600	Pistacia vera	Eragrostis tef	95.75	89.17	90.19	428	forward
CNT30480842	Pistacia vera	Arabidopsis halleri	56.38	51.75	88.1	252	forward
CNT30363108	Pistacia vera	Sorghum bicolor	69.13	38.62	88.35	309	forward
CNT30483063	Pistacia vera	Chara braunii	18.79	37.17	84.52	84	forward
CNT30423787	Pistacia vera	Papaver somniferum	97.54	23.4	89.22	436	forward
CNT30570869	Pistacia vera	Vitis vinifera	73.83	99.1	90.91	330	forward
CNT30704438	Pistacia vera	Prunus avium	28.64	53.11	92.19	128	forward
CNT30645139	Pistacia vera	Cannabis sativa	50.78	82.25	92.95	227	forward
CNT30323623	Pistacia vera	Asparagus officinalis	31.32	44.87	85.71	140	forward
CNT30120974	Pistacia vera	Citrus clementina	97.54	71.95	92.66	436	forward
CNT30101083	Pistacia vera	Oryza rufipogon	95.53	79.96	88.06	427	forward
CNT30116334	Pistacia vera	Oryza nivara	89.71	65.74	88.28	401	forward
CNT30594390	Pistacia vera	Eragrostis curvula	63.09	99.3	89.72	282	forward
CNT30726403	Pistacia vera	Lupinus angustifolius	97.54	91.4	89.91	436	forward

Expression of CNT30160107

Peptides detected in this lncRNA

>peptide 1 (41 aa)
MTSCSFQQPLSQTSRSHACQYLQACRSSVQWWLTFRSRHGQ*

>peptide 2 (30 aa)
MIRTAQSACEVPVIMFLIKSRCPGASMTVQ*

>peptide 3 (44 aa)
MVIPRSRSALSLSSTQAYLNDLLFISAASFSNLSITRLSIPPSL*

>peptide 4 (42 aa)
MSRSINDSAVVLGRLKLPQGNINGDTTFTLSLEFVKHPGILE*

>peptide 5 (47 aa)
LVTAADHLLDTKGKSKKGMLTSLTVLGNTSFKTTSGGVNDKDGTVSL*

Sequence

>CNT30160107
CTTGTTACAGCAGCAGATCATCTGCTTGACACCAAGGGTAAAAGCAAGAAGGGCATGCTCACGAGTTTGACCGTCCTTGGAAATACCAGCTTCAAAACCA
CCAGTGGTGGAGTCAATGATAAGGACGGCACAGTCAGCCTGTGAGGTACCGGTGATCATGTTCTTGATAAAGTCACGATGTCCAGGAGCATCAATGACAG
TGCAGTAGTACTTGGTCGTCTCAAACTTCCACAAGGCAATATCAATGGTGATACCACGTTCACGCTCAGCCTTGAGTTTGTCAAGCACCCAGGCATACTT
GAATGACCTCTTGTTCATTTCAGCAGCCTCTTTCTCAAACCTCTCGATCACACGCTTGTCAATACCTCCAAGCTTGTAGATCAAGTGTCCAGTGGTGGTT
GACTTTCCGGAGTCGACATGGCCAATAACCACAATGCAATATCAATG