CANTATAdb - search

Detailed information on CNT30520930

BLAST search results

BLAST vs Swiss-Prot:
sp|Q41803|EF1A_MAIZE, E-value = 1e-33

BLAST vs NONCODE:
NONCQUT004692, E-value = 3e-52

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30672466	Setaria italica	Setaria viridis	63.74	48.6	97.13	174	forward
CNT30546688	Setaria italica	Ipomoea triloba	61.17	38.84	91.62	167	forward
CNT30378189	Setaria italica	Arabidopsis thaliana	63.74	42.13	91.95	174	forward
CNT30727589	Setaria italica	Corchorus capsularis	59.34	47.65	90.74	162	forward
CNT30195181	Setaria italica	Pisum sativum	60.81	35.02	90.36	166	forward
CNT30709121	Setaria italica	Glycine max	60.81	41.4	86.75	166	forward
CNT30160107	Setaria italica	Pistacia vera	60.07	36.69	90.85	164	forward
CNT3093993	Setaria italica	Solanum tuberosum	60.81	31.8	88.55	166	forward
CNT30288144	Setaria italica	Triticum aestivum	37	27.3	88.12	101	forward
CNT30224124	Setaria italica	Hordeum vulgare	63.74	58.59	94.83	174	forward
CNT30386294	Setaria italica	Triticum turgidum	31.14	23.1	89.41	85	forward
CNT30562819	Setaria italica	Actinidia chinensis	30.04	16.27	89.02	82	forward
CNT30590647	Setaria italica	Musa acuminata	37	32.37	90.1	101	forward
CNT30509848	Setaria italica	Solanum lycopersicum	60.81	72.17	90.36	166	forward
CNT30658093	Setaria italica	Triticum dicoccoides	40.66	25.4	89.19	111	forward
CNT30450104	Setaria italica	Saccharum spontaneum	30.04	19.66	90.24	82	forward
CNT30608684	Setaria italica	Gossypium raimondii	59.34	38.48	89.51	162	forward
CNT3067093	Setaria italica	Leersia perrieri	30.77	18.79	96.43	84	forward
CNT30646927	Setaria italica	Rosa chinensis	26.37	21.43	93.06	72	forward
CNT30625732	Setaria italica	Daucus carota	70.33	89.72	84.9	192	forward
CNT30689637	Setaria italica	Triticum urartu	63.74	17.83	92.53	174	forward
CNT30721628	Setaria italica	Triticum spelta	48.72	40.18	93.98	133	forward
CNT30338600	Setaria italica	Eragrostis tef	63.74	36.25	94.25	174	forward
CNT30480842	Setaria italica	Arabidopsis halleri	37	20.74	96.04	101	forward
CNT30368333	Setaria italica	Sorghum bicolor	90.48	91.82	91.5	247	forward
CNT30354785	Setaria italica	Lactuca sativa	55.68	23.31	84.87	152	forward
CNT30483063	Setaria italica	Chara braunii	28.57	34.51	89.74	78	forward
CNT30570869	Setaria italica	Vitis vinifera	60.81	49.85	89.16	166	forward
CNT30704438	Setaria italica	Prunus avium	76.56	86.72	85.17	209	forward
CNT30644460	Setaria italica	Cannabis sativa	56.04	51.17	89.54	153	forward
CNT30323623	Setaria italica	Asparagus officinalis	42.49	37.18	84.48	116	forward
CNT30120974	Setaria italica	Citrus clementina	61.17	27.56	91.62	167	forward
CNT30101083	Setaria italica	Oryza rufipogon	63.74	32.58	93.1	174	forward
CNT30116334	Setaria italica	Oryza nivara	63.74	28.52	93.1	174	forward
CNT30594407	Setaria italica	Eragrostis curvula	63.74	61.27	95.4	174	forward
CNT30726347	Setaria italica	Lupinus angustifolius	63.74	36.48	89.66	174	forward

Expression of CNT30520930

Peptides detected in this lncRNA

>peptide 1 (53 aa)
RRACSRVWPSLEIPASKPPVVESMIRTAQSAWEVPVIMFLMKSRCPGASMTVQ*

>peptide 2 (70 aa)
KESMLTGLAILGDTSLKTTSGGVNDKDSTVCLGGTGNHVLDEVTVSRGVNDGAVVLGGRWWSTCQSRRGQ*

Sequence

>CNT30520930
CAAGGAGAGCATGCTCACGGGTCTGGCCATCCTTGGAGATACCAGCCTCAAAACCACCAGTGGTGGAGTCAATGATAAGGACAGCACAGTCTGCCTGGGA
GGTACCGGTAATCATGTTCTTGATGAAGTCACGGTGTCCAGGGGCGTCAATGACGGTGCAGTAGTACTTGGTGGCCGGTGGTGGTCGACTTGCCAGAGTC
GACGTGGCCAATGACCACGATGTTGATGTGGGACTTCTCCTTACCCATGGCTGCAGGTGAGGCTTAAACTGCT