« Back to Pisum sativum search


Detailed information on CNT30195181


BLAST search results

BLAST vs Swiss-Prot:
sp|O49169|EF1A_MANES, E-value = 2e-108

BLAST vs NONCODE:
NONMEST004097, E-value = 2e-153

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672466Pisum sativumSetaria viridis60.5580.1790.24287forward
CNT30520930Pisum sativumSetaria italica35.0260.8190.36166forward
CNT30546688Pisum sativumIpomoea triloba90.5199.7787.88429forward
CNT30378189Pisum sativumArabidopsis thaliana58.2366.8388.41276forward
CNT30727591Pisum sativumCorchorus capsularis97.4717.1189.61462forward
CNT30380192Pisum sativumManihot esculenta97.4720.2590.04462forward
CNT30160107Pisum sativumPistacia vera91.9897.5488.99436forward
CNT30637620Pisum sativumCapsicum annuum59.0714.5888.21280forward
CNT3093993Pisum sativumSolanum tuberosum91.7783.3387.59435forward
CNT30288144Pisum sativumTriticum aestivum72.7893.2487.83345forward
CNT30224124Pisum sativumHordeum vulgare58.0292.5989.45275forward
CNT30386294Pisum sativumTriticum turgidum71.191.5887.83337forward
CNT30562819Pisum sativumActinidia chinensis69.4165.2888.15329forward
CNT30590647Pisum sativumMusa acuminata30.5946.4786.9145forward
CNT3084119Pisum sativumVigna radiata97.4725.9687.66462forward
CNT30233912Pisum sativumBrassica oleracea45.9997.3287.16218forward
CNT30509848Pisum sativumSolanum lycopersicum45.7894.3589.86217forward
CNT30658093Pisum sativumTriticum dicoccoides75.1181.4687.64356forward
CNT30450104Pisum sativumSaccharum spontaneum19.6222.386.0293forward
CNT30608684Pisum sativumGossypium raimondii85.2395.9688.12404forward
CNT30218533Pisum sativumKalanchoe fedtschenkoi23.6321.5488.39112forward
CNT3067093Pisum sativumLeersia perrieri51.0554.1487.6242forward
CNT30646927Pisum sativumRosa chinensis66.2493.4590.45314forward
CNT30625732Pisum sativumDaucus carota28.4863.0891.85135forward
CNT30689637Pisum sativumTriticum urartu94.345.887.47447forward
CNT30721809Pisum sativumTriticum spelta54.4317.189.53258forward
CNT30338600Pisum sativumEragrostis tef94.9493.7587.33450forward
CNT30480842Pisum sativumArabidopsis halleri58.8657.2986.02279forward
CNT30363108Pisum sativumSorghum bicolor70.894285.71336forward
CNT30355843Pisum sativumLactuca sativa48.127.0588.16228forward
CNT30483063Pisum sativumChara braunii20.2542.4882.2996forward
CNT30423787Pisum sativumPapaver somniferum94.9424.1590.22450forward
CNT30570869Pisum sativumVitis vinifera70.2510089.49333forward
CNT30645139Pisum sativumCannabis sativa49.1684.4293.56233forward
CNT3031228Pisum sativumTheobroma cacao22.5743.1591.59107forward
CNT30323623Pisum sativumAsparagus officinalis29.5444.8783.57140forward
CNT30120974Pisum sativumCitrus clementina97.4776.2487.66462forward
CNT30101083Pisum sativumOryza rufipogon89.6679.5986.82425forward
CNT30116334Pisum sativumOryza nivara80.862.7987.47383forward
CNT30594407Pisum sativumEragrostis curvula59.4999.388.3282forward
CNT30726413Pisum sativumLupinus angustifolius99.5898.9590.68472forward

Expression of CNT30195181

Peptides detected in this lncRNA

>peptide 1 (83 aa)
MFTGLPILRDTGFKTTSGGINNKDSTISLGGSSNHVLDKVTMSRSINDCAVVLGGLKFPQGNINGDTSFTLSLKLVKNPCILE*

>peptide 2 (44 aa)
MVIPLSRSALSLSRTHAYLNERLFISAASFSNLSITRLSIPPSL*

>peptide 3 (68 aa)
LLQQQIICFTPRVKASSACSRVCPSLEIPASKPPVVESIIRTAQSAWEVPVIMFLIKSRCPGASMTVQ*

>peptide 4 (41 aa)
MNACSSQLLPSQISQSHACQYLLACRSSDQWWLIFLSRHVQ*

Sequence

>CNT30195181
CTTGTTACAACAACAAATCATCTGCTTCACACCAAGAGTAAAGGCAAGTAGTGCATGTTCACGGGTCTGCCCATCCTTAGAGATACCGGCTTCAAAACCA
CCAGTGGTGGAATCAATAATAAGGACAGCACAATCAGCCTGGGAGGTTCCAGTAATCATGTTCTTGATAAAGTCACGATGTCCAGGAGCATCAATGACTG
TGCAGTAGTACTTGGTGGTCTCAAATTTCCACAAGGCAATATCAATGGTGATACCTCTTTCACGCTCAGCCTTAAGCTTGTCAAGAACCCATGCATACTT
GAATGAACGCTTGTTCATCTCAGCTGCTTCCTTCTCAAATCTCTCAATCACACGCTTGTCAATACCTCCTAGCTTGTAGATCAAGTGACCAGTGGTGGTT
GATTTTCCTGAGTCGACATGTCCAATGACGACAATGTTGATATGAACCTTTTCCTTTCCCATGATGTCTTAACT