Detailed information on CNT30721628


BLAST search results

BLAST vs Swiss-Prot:
sp|O49169|EF1A_MANES, E-value = 2e-50

BLAST vs NONCODE:
NONCQUT004692, E-value = 6e-48

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672466Triticum speltaSetaria viridis55.5951.495.11184forward
CNT30520930Triticum speltaSetaria italica40.1848.7293.98133forward
CNT30378189Triticum speltaArabidopsis thaliana53.4742.8689.83177forward
CNT30637620Triticum speltaCapsicum annuum51.368.8589.41170forward
CNT30224124Triticum speltaHordeum vulgare54.3860.6195.56180forward
CNT30590647Triticum speltaMusa acuminata43.8146.4790.34145forward
CNT30509848Triticum speltaSolanum lycopersicum52.5775.6587.93174forward
CNT30625732Triticum speltaDaucus carota30.8247.6686.27102forward
CNT30368333Triticum speltaSorghum bicolor46.8357.6293.55155forward
CNT30354785Triticum speltaLactuca sativa53.1726.9985.23176forward
CNT30644460Triticum speltaCannabis sativa89.439983.11296forward
CNT30594407Triticum speltaEragrostis curvula53.4762.3296.61177forward
CNT3039699Triticum speltaMarchantia polymorpha38.0714.8189.68126forward

Expression of CNT30721628

SRR9114152: 5.17 RPKM

Peptides detected in this lncRNA

>peptide 1 (82 aa)
AMCEVWHYTLLQQQIICFTPRVKARRACSRVWPSLEIPASKPPVVESMMRTAQSAWEVPVIMFLMKSRSTWLSQTSRGQYRW*

>peptide 2 (28 aa)
MVIPLSRSALSLSSTQAYLKDLLFISAAS

Sequence

>CNT30721628
AGCAATGTGTGAGGTGTGGCATTATACCTTGTTGCAGCAGCAGATCATCTGCTTCACTCCAAGAGTGAAAGCAAGGAGGGCGTGCTCACGTGTCTGGCCA
TCCTTGGAGATACCAGCCTCAAAACCACCAGTGGTGGAGTCGATGATGAGAACAGCACAGTCAGCCTGGGAGGTACCGGTGATCATGTTCTTGATGAAGT
CACGTAGTACTTGGTTGTCTCAAACTTCCAGAGGGCAATATCGATGGTGATACCTCTCTCACGCTCGGCCTTGAGCTTGTCAAGCACCCAGGCGTACTTG
AAAGACCTCTTGTTCATTTCAGCGGCTTCCT