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Detailed information on CNT30689637


BLAST search results

BLAST vs Swiss-Prot:
sp|P17745|EFTU_ARATH, E-value = 9e-23

BLAST vs NONCODE:
NONCQUT004692, E-value = 1e-88

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672466Triticum urartuSetaria viridis32.5888.8394.65318forward
CNT30520930Triticum urartuSetaria italica17.8363.7492.53174forward
CNT30546688Triticum urartuIpomoea triloba44.0610087.67430forward
CNT30378189Triticum urartuArabidopsis thaliana27.9766.191.21273forward
CNT30380125Triticum urartuManihot esculenta47.6438.7889.89465forward
CNT30195181Triticum urartuPisum sativum45.894.387.47447forward
CNT30709121Triticum urartuGlycine max42.32102.9984.02413forward
CNT30160107Triticum urartuPistacia vera44.7797.7689.02437forward
CNT30637620Triticum urartuCapsicum annuum28.8914.6988.3282forward
CNT3093993Triticum urartuSolanum tuberosum47.5488.8987.72464forward
CNT30288144Triticum urartuTriticum aestivum36.6896.7698.6358forward
CNT30224124Triticum urartuHordeum vulgare30.4310094.61297forward
CNT30386294Triticum urartuTriticum turgidum37.398.9197.8364forward
CNT30562819Triticum urartuActinidia chinensis33.7165.2889.67329forward
CNT30590647Triticum urartuMusa acuminata14.8646.4788.97145forward
CNT3084119Triticum urartuVigna radiata47.5426.0787.93464forward
CNT30233912Triticum urartuBrassica oleracea22.5498.2190.45220forward
CNT30509848Triticum urartuSolanum lycopersicum23.5710087.83230forward
CNT30247994Triticum urartuAvena sativa37.324.5994.78364forward
CNT30658093Triticum urartuTriticum dicoccoides39.2487.6497.91383forward
CNT30312075Triticum urartuCamelina sativa21.5237.3791.43210forward
CNT30614135Triticum urartuArabis alpina47.5429.7490.3464forward
CNT30450104Triticum urartuSaccharum spontaneum9.7322.7891.5895forward
CNT30608684Triticum urartuGossypium raimondii41.796.6786.73407forward
CNT30218533Triticum urartuKalanchoe fedtschenkoi11.5821.7387.61113forward
CNT3067093Triticum urartuLeersia perrieri27.4659.9694.03268forward
CNT30646927Triticum urartuRosa chinensis32.1793.4588.85314forward
CNT30625732Triticum urartuDaucus carota14.2464.9588.49139forward
CNT30338600Triticum urartuEragrostis tef47.0395.6291.72459forward
CNT30480842Triticum urartuArabidopsis halleri28.6957.4987.86280forward
CNT30363108Triticum urartuSorghum bicolor35.254390.41344forward
CNT30423787Triticum urartuPapaver somniferum47.9525.1286.75468forward
CNT30570869Triticum urartuVitis vinifera34.1210087.39333forward
CNT30704438Triticum urartuPrunus avium12.9152.2888.89126forward
CNT30645139Triticum urartuCannabis sativa23.8784.4290.13233forward
CNT30323623Triticum urartuAsparagus officinalis17.4254.4983.53170forward
CNT30120974Triticum urartuCitrus clementina47.5476.5789.01464forward
CNT30101083Triticum urartuOryza rufipogon46.6285.2192.75455forward
CNT30116334Triticum urartuOryza nivara43.757092.51427forward
CNT30594407Triticum urartuEragrostis curvula28.8999.394.68282forward
CNT30726413Triticum urartuLupinus angustifolius47.4497.0687.9463forward

Expression of CNT30689637

Peptides detected in this lncRNA

>peptide 1 (36 aa)
MRWPVVVDLPESTWPMTTMLMWIFSLPMAAGATNYLH

>peptide 2 (61 aa)
MTVQEYLVVSNFQRAISMVIPLSRSALSLSSTQAYLKDLLFISAASFSNLSITRLSMPPSL*

Sequence

>CNT30689637
AATAGGCAAACAAACTATTTAGTTTTTAAATTACAACCTCCATAACTAAGTAGAAGACAATTTTACAGTTCAATCAGAGGTAGCAATATATAACAAAGTC
GGTACCAAATGAAGATCCCACTTAGTGAAGTAATGCTAAGAAATCTCCTCTAGTGACCTACTCATACTCAGTGAAGAAATGCTATGAAACAACCAGGATT
GACACTGGCAATTCAGTGCTACTTGTGAACATGTGCATTTTACTGATTCTGAAGTATATAGCAAAATAGTGGTAGTACTGTGAATTAAGATGTAACTAAC
CAAATGAGCAACATATGTTATAATCACAAACCTAAATAAATGGCAGCCAGTTCACATGGAGTTTCTGTACTACTTAACATGGACAGTCATCAAGTAATTC
TCAATCAAAGTGGATAGCAAAACAGTAAACACATCATACGGCTACACATAAGAACAAGCATTGAAAGGTTAATAGTAAGTATACCTTGTTGCAGCAGCAG
ATCATCTGCTTCACACCAAGAGTGAAAGCAAGGAGAGCGTGCTCACGGGTCTGGCCATCCTTGGAGATACCAGCCTCAAAACCACCAGTGGTGGAGTCAA
TGATAAGCACAGCACAATCAGCCTGGGAGGTCCCAGTGATCATGTTCTTGATGAAATCACGGTGACCAGGAGCATCAATGACAGTGCAGGAGTACTTGGT
GGTCTCGAACTTCCAGAGAGCAATATCAATGGTGATACCCCTCTCACGCTCAGCCTTGAGCTTGTCAAGCACCCAGGCGTACTTGAAAGACCTCTTGTTC
ATCTCAGCGGCTTCCTTCTCGAACCTCTCGATCACACGCTTGTCAATGCCTCCAAGCTTGTAGATGAGGTGGCCAGTCGTGGTTGACTTGCCAGAGTCGA
CATGGCCAATGACCACAATGCTGATGTGGATCTTCTCCTTGCCCATGGCTGCTGGAGCTACGAACTACCTGCATGG