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Detailed information on CNT30646927


BLAST search results

BLAST vs Swiss-Prot:
sp|P43643|EF1A_TOBAC, E-value = 9e-71

BLAST vs NONCODE:
NONMEST004097, E-value = 9e-112

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672934Rosa chinensisSetaria viridis94.0557.2589.87316forward
CNT30520930Rosa chinensisSetaria italica21.4326.3793.0672forward
CNT30546688Rosa chinensisIpomoea triloba83.3365.1288.57280forward
CNT30698284Rosa chinensisQuercus lobata36.0142.3192.56121forward
CNT30378189Rosa chinensisArabidopsis thaliana38.3931.2390.7129forward
CNT30727591Rosa chinensisCorchorus capsularis94.0511.791.14316forward
CNT30380192Rosa chinensisManihot esculenta94.0513.8590.19316forward
CNT30195181Rosa chinensisPisum sativum93.4566.2490.45314forward
CNT30160107Rosa chinensisPistacia vera83.9363.0990.78282forward
CNT3093993Rosa chinensisSolanum tuberosum86.0155.3688.24289forward
CNT30288144Rosa chinensisTriticum aestivum94.0585.4187.66316forward
CNT30224124Rosa chinensisHordeum vulgare43.1548.8291.72145forward
CNT30386294Rosa chinensisTriticum turgidum94.0585.8787.66316forward
CNT30562819Rosa chinensisActinidia chinensis93.4562.386.31314forward
CNT30590647Rosa chinensisMusa acuminata36.3139.190.16122forward
CNT3084119Rosa chinensisVigna radiata93.1517.5888.82313forward
CNT30233912Rosa chinensisBrassica oleracea65.7798.6690.05221forward
CNT30509848Rosa chinensisSolanum lycopersicum2536.5290.4884forward
CNT30247994Rosa chinensisAvena sativa91.6720.8188.64308forward
CNT30658093Rosa chinensisTriticum dicoccoides94.0572.3187.66316forward
CNT30312075Rosa chinensisCamelina sativa65.4839.1589.09220forward
CNT30614135Rosa chinensisArabis alpina94.3520.3290.54317forward
CNT30450104Rosa chinensisSaccharum spontaneum27.3822.0685.8792forward
CNT30608684Rosa chinensisGossypium raimondii94.0575.0691.14316forward
CNT30218533Rosa chinensisKalanchoe fedtschenkoi33.0421.3587.39111forward
CNT3067093Rosa chinensisLeersia perrieri72.0254.1489.26242forward
CNT30625732Rosa chinensisDaucus carota19.6430.8493.9466forward
CNT30689637Rosa chinensisTriticum urartu93.4532.1788.85314forward
CNT30721809Rosa chinensisTriticum spelta74.716.6390.04251forward
CNT30338600Rosa chinensisEragrostis tef91.6764.1787.34308forward
CNT30480842Rosa chinensisArabidopsis halleri79.1754.6287.97266forward
CNT30363108Rosa chinensisSorghum bicolor91.6738.587.66308forward
CNT30355843Rosa chinensisLactuca sativa67.5626.9385.9227forward
CNT30483063Rosa chinensisChara braunii33.9350.4484.21114forward
CNT30423787Rosa chinensisPapaver somniferum94.3517.0288.96317forward
CNT30570869Rosa chinensisVitis vinifera55.6556.1689.84187forward
CNT30704438Rosa chinensisPrunus avium20.5428.6397.169forward
CNT30645139Rosa chinensisCannabis sativa72.0287.6892.56242forward
CNT3031228Rosa chinensisTheobroma cacao32.4443.9592.66109forward
CNT30323623Rosa chinensisAsparagus officinalis30.6533.0190.29103forward
CNT30120727Rosa chinensisCitrus clementina94.0557.4589.87316forward
CNT30101083Rosa chinensisOryza rufipogon85.4253.7588.5287forward
CNT30585568Rosa chinensisEchinochloa crusgalli29.4619.386.8799forward
CNT30116334Rosa chinensisOryza nivara87.848.3688.47295forward
CNT30594327Rosa chinensisEragrostis curvula77.3873.4586.54260forward
CNT30726402Rosa chinensisLupinus angustifolius86.3160.890.34290forward

Expression of CNT30646927

Peptides detected in this lncRNA

>peptide 1 (55 aa)
HNHTSNHVLDEVTMSRSINDSAVVLGGLKLPESNVNGNTPFTLSLQLVKHPSILE*

>peptide 2 (41 aa)
MNACSSQQPPSRTSQSHACQYPQACRSNDRWWSTSQSQHGQ*

>peptide 3 (46 aa)
MSMVIPLSRSAFSLSSTQAYLNERLFISAASFSNLSITRLSIPPSL*

>peptide 4 (29 aa)
MTGGGRLPRVNMANNHNVDMKLFLAHNEIS

Sequence

>CNT30646927
CACAACCATACCAGTAATCATGTTCTTGATGAAGTCACGATGTCCAGGAGCATCAATGACAGTGCAGTAGTACTTGGTGGTCTCAAACTTCCAGAGAGCA
ATGTCAATGGTAATACCCCTTTCACGCTCAGCCTTCAGCTTGTCAAGCACCCAAGCATACTTGAATGAACGCTTGTTCATCTCAGCAGCCTCCTTCTCGA
ACCTCTCAATCACACGCTTGTCAATACCCCCAAGCTTGTAGATCAAATGACCGGTGGTGGTCGACTTCCCAGAGTCAACATGGCCAATAACCACAATGTT
GATATGAAACTTTTCCTTGCCCATAACGAAATATCA