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Detailed information on CNT30101083


BLAST search results

BLAST vs Swiss-Prot:
sp|Q41803|EF1A_MAIZE, E-value = 4e-117

BLAST vs NONCODE:
NONMEST004097, E-value = 6e-148

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672934Oryza rufipogonSetaria viridis60.4958.5194.12323forward
CNT30520930Oryza rufipogonSetaria italica32.5863.7493.1174forward
CNT30546688Oryza rufipogonIpomoea triloba78.8497.9187.65421forward
CNT30698284Oryza rufipogonQuercus lobata25.0946.8589.55134forward
CNT30378189Oryza rufipogonArabidopsis thaliana49.2563.6890.87263forward
CNT30727591Oryza rufipogonCorchorus capsularis84.8316.7888.08453forward
CNT30380125Oryza rufipogonManihot esculenta84.8337.7888.96453forward
CNT30195181Oryza rufipogonPisum sativum79.5989.6686.82425forward
CNT30709121Oryza rufipogonGlycine max77.34102.9981.36413forward
CNT30160107Oryza rufipogonPistacia vera79.9695.5388.06427forward
CNT30637620Oryza rufipogonCapsicum annuum50.7514.1188.19271forward
CNT3093993Oryza rufipogonSolanum tuberosum84.8386.7887.2453forward
CNT30288144Oryza rufipogonTriticum aestivum64.2392.791.55343forward
CNT30224124Oryza rufipogonHordeum vulgare52.8194.9594.68282forward
CNT30386294Oryza rufipogonTriticum turgidum63.1191.5891.69337forward
CNT30562819Oryza rufipogonActinidia chinensis58.4361.987.18312forward
CNT30590647Oryza rufipogonMusa acuminata25.4743.5988.97136forward
CNT3084119Oryza rufipogonVigna radiata83.5225.0686.77446forward
CNT30233912Oryza rufipogonBrassica oleracea38.291.0789.22204forward
CNT30509848Oryza rufipogonSolanum lycopersicum41.3996.0988.69221forward
CNT30247994Oryza rufipogonAvena sativa67.0424.1992.18358forward
CNT30658093Oryza rufipogonTriticum dicoccoides66.8581.6991.6357forward
CNT30312075Oryza rufipogonCamelina sativa38.236.390.69204forward
CNT30614135Oryza rufipogonArabis alpina84.8329.0488.96453forward
CNT30450104Oryza rufipogonSaccharum spontaneum17.622.5489.3694forward
CNT30608684Oryza rufipogonGossypium raimondii76.2296.6787.96407forward
CNT30218533Oryza rufipogonKalanchoe fedtschenkoi21.3521.9285.09114forward
CNT3067093Oryza rufipogonLeersia perrieri51.3161.395.26274forward
CNT30646927Oryza rufipogonRosa chinensis53.7585.4288.5287forward
CNT30625732Oryza rufipogonDaucus carota26.0364.9585.61139forward
CNT30689637Oryza rufipogonTriticum urartu85.2146.6292.75455forward
CNT30721807Oryza rufipogonTriticum spelta4727.9295.22251forward
CNT30338600Oryza rufipogonEragrostis tef85.2194.7993.19455forward
CNT30480842Oryza rufipogonArabidopsis halleri52.2557.2987.1279forward
CNT30363108Oryza rufipogonSorghum bicolor64.7943.2589.31346forward
CNT30483063Oryza rufipogonChara braunii21.5450.8887.83115forward
CNT30423787Oryza rufipogonPapaver somniferum84.0824.187.53449forward
CNT30570869Oryza rufipogonVitis vinifera60.6797.387.04324forward
CNT30704438Oryza rufipogonPrunus avium23.652.2888.1126forward
CNT30645139Oryza rufipogonCannabis sativa42.5182.2589.43227forward
CNT30323623Oryza rufipogonAsparagus officinalis28.4648.7282.89152forward
CNT30120974Oryza rufipogonCitrus clementina84.8374.7590.29453forward
CNT30116334Oryza rufipogonOryza nivara81.6571.4899.08436forward
CNT30594407Oryza rufipogonEragrostis curvula51.1296.1395.6273forward
CNT30726347Oryza rufipogonLupinus angustifolius80.7190.3687.24431forward
CNT3039699Oryza rufipogonMarchantia polymorpha22.4714.189.17120forward

Expression of CNT30101083

Peptides detected in this lncRNA

>peptide 1 (44 aa)
MVIPLSRSALSLSSTHAYLKDLLFISAASFSNLSITRLSIPPSL*

>peptide 2 (29 aa)
GRMRLPSRFHRNGPWSTWECSRSSASHQE*

Sequence

>CNT30101083
GGTAGGATGAGACTTCCTTCACGATTTCATCGTAACGGGCCTTGGAGTACTTGGGAGTGCAGCAGATCATCTGCTTCACACCAAGAGTGAAAGCAAGAAG
AGCGTGCTCACGGGTCTGGCCATCCTTGGAGATACCAGCCTCAAAACCACCAGTGGTGGAGTCAATGATGAGCACGGCACAGTCAGCCTGGGAGGTACCC
GTGATCATGTTCTTGATGAAGTCACGGTGACCAGGGGCATCGATGACCGTGCAGTAGTACTTGGTGGTCTCGAACTTCCACAGGGCGATATCGATGGTGA
TACCTCTCTCACGCTCGGCCTTGAGCTTGTCGAGCACCCACGCGTACTTGAAGGACCTCTTGTTCATCTCAGCGGCTTCCTTCTCGAACCTCTCAATCAC
ACGCTTGTCGATACCTCCAAGCTTGTAGATCAGATGGCCCGTGGTGGTCGACTTGCCAGAGTCGACGTGGCCAATGACCACAATGTTGATGTGCGTCTTC
TCCTTACCCATGGTTGATTAAGCAGGTAGCTGAC