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Detailed information on CNT30288144


BLAST search results

BLAST vs Swiss-Prot:
sp|P34824|EF1A1_HORVU, E-value = 7e-77

BLAST vs NONCODE:
NONMEST004097, E-value = 2e-116

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672934Triticum aestivumSetaria viridis86.4957.9791.25320forward
CNT30520930Triticum aestivumSetaria italica27.33788.12101forward
CNT30546688Triticum aestivumIpomoea triloba82.771.1687.58306forward
CNT30698284Triticum aestivumQuercus lobata36.2246.8588.06134forward
CNT30378189Triticum aestivumArabidopsis thaliana42.1637.7790.38156forward
CNT30380192Triticum aestivumManihot esculenta92.9715.0890.7344forward
CNT30195181Triticum aestivumPisum sativum93.2472.7887.83345forward
CNT30712097Triticum aestivumGlycine max90.5428.0886.57335forward
CNT30160107Triticum aestivumPistacia vera86.4971.5989.38320forward
CNT3093993Triticum aestivumSolanum tuberosum91.3564.7589.05338forward
CNT30224124Triticum aestivumHordeum vulgare46.7658.2594.22173forward
CNT30386294Triticum aestivumTriticum turgidum97.5798.1100361forward
CNT30562819Triticum aestivumActinidia chinensis88.9265.2889.06329forward
CNT30590647Triticum aestivumMusa acuminata36.7643.5988.24136forward
CNT3084119Triticum aestivumVigna radiata92.1619.1688.27341forward
CNT30233912Triticum aestivumBrassica oleracea59.4698.2189.55220forward
CNT30509848Triticum aestivumSolanum lycopersicum28.6546.0988.68106forward
CNT30247994Triticum aestivumAvena sativa96.7624.1994.13358forward
CNT30658093Triticum aestivumTriticum dicoccoides10084.67100370forward
CNT30312075Triticum aestivumCamelina sativa57.337.7291.04212forward
CNT30450104Triticum aestivumSaccharum spontaneum25.6822.7891.5895forward
CNT30608684Triticum aestivumGossypium raimondii91.3580.2986.39338forward
CNT30218533Triticum aestivumKalanchoe fedtschenkoi30.5421.7387.61113forward
CNT3067093Triticum aestivumLeersia perrieri70.5458.3994.25261forward
CNT30646927Triticum aestivumRosa chinensis85.4194.0587.66316forward
CNT30625732Triticum aestivumDaucus carota24.3242.0687.7890forward
CNT30689637Triticum aestivumTriticum urartu96.7636.6898.6358forward
CNT30721809Triticum aestivumTriticum spelta68.6516.8394.09254forward
CNT30338600Triticum aestivumEragrostis tef94.5972.9292350forward
CNT30480842Triticum aestivumArabidopsis halleri75.6857.4987.14280forward
CNT30363108Triticum aestivumSorghum bicolor92.974390.12344forward
CNT30355843Triticum aestivumLactuca sativa61.3526.9386.78227forward
CNT30483063Triticum aestivumChara braunii31.0850.8886.09115forward
CNT30423787Triticum aestivumPapaver somniferum90.5417.9886.87335forward
CNT30570869Triticum aestivumVitis vinifera56.4962.7687.08209forward
CNT30704438Triticum aestivumPrunus avium24.3237.349090forward
CNT30645139Triticum aestivumCannabis sativa63.5185.1490.21235forward
CNT3031228Triticum aestivumTheobroma cacao3044.7687.39111forward
CNT30323623Triticum aestivumAsparagus officinalis32.9739.185.25122forward
CNT30120727Triticum aestivumCitrus clementina90.5460.9189.25335forward
CNT30101083Triticum aestivumOryza rufipogon92.764.2391.55343forward
CNT30585568Triticum aestivumEchinochloa crusgalli26.7619.390.9199forward
CNT30116334Triticum aestivumOryza nivara92.756.2391.84343forward
CNT30594327Triticum aestivumEragrostis curvula70.5473.7391.57261forward
CNT30726402Triticum aestivumLupinus angustifolius93.2472.3388.12345forward

Expression of CNT30288144

Peptides detected in this lncRNA

>peptide 1 (61 aa)
MTVHEYLVVSNFHRAISMVIPLSRSALSLSSTQAYLKDLLFISAASFSNLSITRLSMPPSL*

>peptide 2 (94 aa)
DKHSTISLGGTSDHVLDEITVTRSINDSARVLGGLELPQSNINGDTSLTLSLELVKHPGVLERPLVHLSGFLLEPLDHTLVNASKLVDEVASRG*

>peptide 3 (35 aa)
MRWPVVVDLPESTWPMTTMLMWIFSFPMAAGAVNYL

Sequence

>CNT30288144
GATAAGCACAGCACAATCAGCCTGGGAGGTACCAGTGATCATGTTCTTGATGAAATCACGGTGACCAGGAGCATCAATGACAGTGCACGAGTACTTGGTG
GTCTCGAACTTCCACAGAGCAATATCAATGGTGATACCTCTCTCACGCTCAGCCTTGAGCTTGTCAAGCACCCAGGCGTACTTGAAAGACCTCTTGTTCA
TCTCAGCGGCTTCCTTCTCGAACCTCTCGATCACACGCTTGTCAATGCCTCCAAGCTTGTAGATGAGGTGGCCAGTCGTGGTTGACTTGCCAGAGTCGAC
ATGGCCAATGACCACAATGCTGATGTGGATCTTCTCCTTTCCCATGGCTGCTGGAGCTGTTAACTACCTG