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Detailed information on CNT3067093


BLAST search results

BLAST vs Swiss-Prot:
sp|Q41803|EF1A_MAIZE, E-value = 1e-55

BLAST vs NONCODE:
NONMEST004097, E-value = 6e-92

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672934Leersia perrieriSetaria viridis59.2848.0196.6265forward
CNT30520930Leersia perrieriSetaria italica18.7930.7796.4384forward
CNT30546688Leersia perrieriIpomoea triloba51.6853.7288.74231forward
CNT30698284Leersia perrieriQuercus lobata30.6547.989.78137forward
CNT30378189Leersia perrieriArabidopsis thaliana29.9832.4588.81134forward
CNT30727591Leersia perrieriCorchorus capsularis58.849.7490.11263forward
CNT30380192Leersia perrieriManihot esculenta58.8411.5391.25263forward
CNT30629687Leersia perrieriVigna unguiculata37.368.4688.62167forward
CNT30195181Leersia perrieriPisum sativum54.1451.0587.6242forward
CNT30712097Leersia perrieriGlycine max53.4720.0386.61239forward
CNT30160107Leersia perrieriPistacia vera53.0253.0289.87237forward
CNT3093993Leersia perrieriSolanum tuberosum58.8450.3887.83263forward
CNT30288144Leersia perrieriTriticum aestivum58.3970.5494.25261forward
CNT30224124Leersia perrieriHordeum vulgare20.5830.9898.9192forward
CNT30386294Leersia perrieriTriticum turgidum58.3970.9294.25261forward
CNT30562819Leersia perrieriActinidia chinensis54.8148.6187.76245forward
CNT30590647Leersia perrieriMusa acuminata26.6238.1488.24119forward
CNT3084119Leersia perrieriVigna radiata58.8414.7888.59263forward
CNT30233912Leersia perrieriBrassica oleracea45.4190.6290.64203forward
CNT30247994Leersia perrieriAvena sativa60.1818.1894.42269forward
CNT30658093Leersia perrieriTriticum dicoccoides58.3959.7394.25261forward
CNT30312075Leersia perrieriCamelina sativa35.5728.2992.45159forward
CNT30450104Leersia perrieriSaccharum spontaneum21.2522.7890.5395forward
CNT30608684Leersia perrieriGossypium raimondii58.1761.7687.31260forward
CNT30218533Leersia perrieriKalanchoe fedtschenkoi25.2821.7386.73113forward
CNT30646927Leersia perrieriRosa chinensis54.1472.0289.26242forward
CNT30625732Leersia perrieriDaucus carota10.5121.9693.6247forward
CNT30689637Leersia perrieriTriticum urartu59.9627.4694.03268forward
CNT30721809Leersia perrieriTriticum spelta44.313.1295.45198forward
CNT30338600Leersia perrieriEragrostis tef60.456.2594.07270forward
CNT30480842Leersia perrieriArabidopsis halleri59.2854.4188.3265forward
CNT30363108Leersia perrieriSorghum bicolor59.5133.2591.73266forward
CNT30355843Leersia perrieriLactuca sativa51.2327.1686.46229forward
CNT30483063Leersia perrieriChara braunii25.7350.8886.09115forward
CNT30423787Leersia perrieriPapaver somniferum58.8414.1288.59263forward
CNT30570869Leersia perrieriVitis vinifera29.9840.2488.06134forward
CNT30704438Leersia perrieriPrunus avium18.7934.8590.4884forward
CNT30645139Leersia perrieriCannabis sativa40.7265.9491.21182forward
CNT3024873Leersia perrieriPopulus trichocarpa37.5829.7989.88168forward
CNT30120727Leersia perrieriCitrus clementina58.8447.8291.63263forward
CNT30101083Leersia perrieriOryza rufipogon61.351.3195.26274forward
CNT30585568Leersia perrieriEchinochloa crusgalli22.3719.4992100forward
CNT30116334Leersia perrieriOryza nivara61.7445.2595.65276forward
CNT30594327Leersia perrieriEragrostis curvula59.7375.4293.26267forward
CNT30726402Leersia perrieriLupinus angustifolius54.8151.3688.98245forward

Expression of CNT3067093

Peptides detected in this lncRNA

>peptide 1 (44 aa)
MVIPLSRSALSLSSTHAYLKDLLFISAASFSNLSITRLSIPPSL*

>peptide 2 (88 aa)
AVVLGGLELPQGNINGDTPLTLCLELVKHPRVLEGPLVHLSGLLLEPLDHTLVDSSKLVDQVASGGRLARVDVANDHNVDVGLLLTHG*

Sequence

>CNT3067093
GTGCAGTAGTACTTGGTGGTCTCGAACTTCCACAGGGCAATATCAATGGTGATACCCCTCTCACGCTCTGCCTTGAGCTTGTCAAGCACCCACGCGTACT
TGAAGGACCTCTTGTTCATCTCAGCGGCCTCCTTCTCGAACCTCTCGATCACACGCTTGTCGATTCCTCCAAGCTTGTAGATCAGGTGGCCAGTGGTGGT
CGACTTGCCAGAGTCGACGTGGCCAATGACCACAATGTTGATGTGGGTCTTCTCCTTACCCATGGCTGAATAAGGAAGTTGCTAACAAACTGCAGCACAC
AAGAAAACAAAGATTACTATAGTATTATAGACAAAACAGAGCAGATAGCGTCTACCAAAGTAGCACAGTTAAGGACCATGAGAATCAGCAGGTATTTACA
CACACAAGATGGCAATCAACCCAATCAAACAGGTTACAGATAATGAC