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Detailed information on CNT30590647


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672466Musa acuminataSetaria viridis46.4740.589.66145forward
CNT30520930Musa acuminataSetaria italica32.373790.1101forward
CNT30546688Musa acuminataIpomoea triloba45.1932.7985.82141forward
CNT30698284Musa acuminataQuercus lobata43.9147.989.78137forward
CNT30378189Musa acuminataArabidopsis thaliana46.4735.1188.28145forward
CNT30727589Musa acuminataCorchorus capsularis45.1941.4792.2141forward
CNT30195181Musa acuminataPisum sativum46.4730.5986.9145forward
CNT30709121Musa acuminataGlycine max31.7324.6989.999forward
CNT30160107Musa acuminataPistacia vera45.1931.5487.23141forward
CNT3093993Musa acuminataSolanum tuberosum46.4727.7887.59145forward
CNT30288144Musa acuminataTriticum aestivum43.5936.7688.24136forward
CNT30224124Musa acuminataHordeum vulgare46.4748.8289.66145forward
CNT30386294Musa acuminataTriticum turgidum43.5936.9688.24136forward
CNT30564261Musa acuminataActinidia chinensis44.2349.1188.41138forward
CNT30233912Musa acuminataBrassica oleracea2534.8288.4678forward
CNT30509848Musa acuminataSolanum lycopersicum46.4763.0488.97145forward
CNT30658093Musa acuminataTriticum dicoccoides43.5931.1288.24136forward
CNT30450104Musa acuminataSaccharum spontaneum30.1322.5493.6294forward
CNT30608684Musa acuminataGossypium raimondii44.2332.7889.13138forward
CNT30218533Musa acuminataKalanchoe fedtschenkoi37.1822.3186.21116forward
CNT3067093Musa acuminataLeersia perrieri38.1426.6288.24119forward
CNT30646927Musa acuminataRosa chinensis39.136.3190.16122forward
CNT30625732Musa acuminataDaucus carota20.5129.9189.0664forward
CNT30689637Musa acuminataTriticum urartu46.4714.8688.97145forward
CNT30721628Musa acuminataTriticum spelta46.4743.8190.34145forward
CNT30338600Musa acuminataEragrostis tef41.6727.0888.46130forward
CNT30480842Musa acuminataArabidopsis halleri46.7929.9886.3146forward
CNT30362246Musa acuminataSorghum bicolor44.8725.4191.43140forward
CNT30483063Musa acuminataChara braunii36.8650.8888.7115forward
CNT30570869Musa acuminataVitis vinifera45.1942.3488.65141forward
CNT30704438Musa acuminataPrunus avium24.6831.9588.3177forward
CNT30644460Musa acuminataCannabis sativa46.4748.4987.59145forward
CNT3053086Musa acuminataAmborella trichopoda24.6812.1585.7177forward
CNT30120727Musa acuminataCitrus clementina45.1925.6488.65141forward
CNT30101083Musa acuminataOryza rufipogon43.5925.4788.97136forward
CNT30594407Musa acuminataEragrostis curvula46.4751.0690.34145forward
CNT30726403Musa acuminataLupinus angustifolius40.0626.2190.4125forward
CNT3039699Musa acuminataMarchantia polymorpha40.3814.8184.92126forward

Expression of CNT30590647

Peptides detected in this lncRNA

>peptide 1 (65 aa)
LVAAANHLFDSKSKSKQSMLTSLAILRDTSFETTSGRINDENSTVSLGASFSNLSITRLSIPPSL*

>peptide 2 (66 aa)
LLQQQIICLTPRVKASRACSRVWPSLEIPASKPPVVESMMRTAQSAWEPPFQTSRSHACQYHPACR*

Sequence

>CNT30590647
CTTGTTGCAGCAGCAAATCATCTGTTTGACTCCAAGAGTAAAAGCAAGCAGAGCATGCTCACGAGTCTGGCCATCCTTAGAGATACCAGCTTCGAAACCA
CCAGTGGTCGAATCAATGATGAGAACAGCACAGTCAGCCTGGGAGCCTCCTTTTCAAACCTCTCGATCACACGCTTGTCAATACCACCCAGCTTGTAGAT
GAGATGACCGGTGGTGGTCGACTTGCCGGAGTCAACATGGCCAATGACCACAATGCTGATGTGAACCTTCTCTTTCCCCATGGTGATTAGGACTCAAAAC
AAACACGACTAC