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Detailed information on CNT30672466


BLAST search results

BLAST vs Swiss-Prot:
sp|Q41803|EF1A_MAIZE, E-value = 6e-71

BLAST vs NONCODE:
NONMEST004097, E-value = 3e-102

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30520930Setaria viridisSetaria italica48.663.7497.13174forward
CNT30546688Setaria viridisIpomoea triloba87.4372.7989.78313forward
CNT30378189Setaria viridisArabidopsis thaliana76.2666.190.48273forward
CNT30195181Setaria viridisPisum sativum80.1760.5590.24287forward
CNT30709121Setaria viridisGlycine max46.3741.489.76166forward
CNT30160107Setaria viridisPistacia vera87.4370.0290.1313forward
CNT30637620Setaria viridisCapsicum annuum78.7714.6989.01282forward
CNT3093993Setaria viridisSolanum tuberosum87.9960.3487.94315forward
CNT30224124Setaria viridisHordeum vulgare82.1298.9996.26294forward
CNT30590647Setaria viridisMusa acuminata40.546.4789.66145forward
CNT30509848Setaria viridisSolanum lycopersicum64.2510089.57230forward
CNT30625732Setaria viridisDaucus carota38.8364.9587.77139forward
CNT30689637Setaria viridisTriticum urartu88.8332.5894.65318forward
CNT30721628Setaria viridisTriticum spelta51.455.5995.11184forward
CNT30368333Setaria viridisSorghum bicolor54.4772.4995.9195forward
CNT30354785Setaria viridisLactuca sativa49.1626.9984.09176forward
CNT30570869Setaria viridisVitis vinifera87.4393.9988.82313forward
CNT30704438Setaria viridisPrunus avium35.252.2889.68126forward
CNT30644460Setaria viridisCannabis sativa56.9868.2389.22204forward
CNT30323623Setaria viridisAsparagus officinalis47.4954.4981.76170forward
CNT30594407Setaria viridisEragrostis curvula78.7799.395.74282forward
CNT30726347Setaria viridisLupinus angustifolius87.4365.6289.78313forward

Expression of CNT30672466

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MIRTAQSAWEVPVIMFLMKSRCPGASMTVQ*

>peptide 2 (89 aa)
MLTGLAILGDTSLKTTSSGVNDKDSTVCLGGTSDHVLDEVTVSRGINDCAVVLGGLELPQGNINGDTPLTLSLELVKHPRILEGPLATWW

Sequence

>CNT30672466
ACCAGAATGAGTTAGGGATTTCTGGAATTATACCTTGTTGCAGCAGCAGATCATCTGCTTCACTCCAAGAGTGAAAGCAAGGAGAGCATGCTCACGGGTC
TGGCCATCCTTGGAGATACCAGCCTCAAAACCACCAGTAGTGGAGTCAATGATAAGGACAGCACAGTCTGCCTGGGAGGTACCAGTGATCATGTTCTTGA
TGAAGTCACGGTGTCCAGGGGCATCAATGACTGTGCAGTAGTACTTGGTGGTCTCGAACTTCCACAGGGCAATATCAATGGTGATACCCCTCTCACGCTC
AGCCTTGAGCTTGTCAAGCACCCACGCATACTTGAAGGACCTCTTGCTACCTGGTGGC