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Detailed information on CNT30480842


BLAST search results

BLAST vs Swiss-Prot:
sp|Q8W4H7|EF1A2_ARATH, E-value = 9e-74

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672934Arabidopsis halleriSetaria viridis57.2950.5487.81279forward
CNT30520930Arabidopsis halleriSetaria italica20.743796.04101forward
CNT30546688Arabidopsis halleriIpomoea triloba49.956.5188.07243forward
CNT30698284Arabidopsis halleriQuercus lobata28.1347.991.97137forward
CNT30378189Arabidopsis halleriArabidopsis thaliana29.7735.1194.48145forward
CNT30727591Arabidopsis halleriCorchorus capsularis57.0810.390.65278forward
CNT30380125Arabidopsis halleriManihot esculenta58.1123.688.69283forward
CNT30195181Arabidopsis halleriPisum sativum57.2958.8686.02279forward
CNT30712097Arabidopsis halleriGlycine max56.4723.0585.09275forward
CNT30160107Arabidopsis halleriPistacia vera51.7556.3888.1252forward
CNT30637620Arabidopsis halleriCapsicum annuum30.187.6691.16147forward
CNT3093993Arabidopsis halleriSolanum tuberosum56.4752.6888.36275forward
CNT30288144Arabidopsis halleriTriticum aestivum57.4975.6887.14280forward
CNT30224124Arabidopsis halleriHordeum vulgare30.3949.8390.54148forward
CNT30386294Arabidopsis halleriTriticum turgidum57.4976.0987.14280forward
CNT30564261Arabidopsis halleriActinidia chinensis46.8281.1489.91228forward
CNT30590647Arabidopsis halleriMusa acuminata29.9846.7986.3146forward
CNT30233912Arabidopsis halleriBrassica oleracea44.1595.9894.88215forward
CNT30509848Arabidopsis halleriSolanum lycopersicum27.7258.791.85135forward
CNT30658093Arabidopsis halleriTriticum dicoccoides57.4964.0787.14280forward
CNT30450104Arabidopsis halleriSaccharum spontaneum18.8922.0685.8792forward
CNT30608684Arabidopsis halleriGossypium raimondii56.4765.3287.27275forward
CNT30218533Arabidopsis halleriKalanchoe fedtschenkoi23.4121.9283.33114forward
CNT3067093Arabidopsis halleriLeersia perrieri54.4159.2888.3265forward
CNT30646927Arabidopsis halleriRosa chinensis54.6279.1787.97266forward
CNT30625732Arabidopsis halleriDaucus carota13.5530.8490.9166forward
CNT30689637Arabidopsis halleriTriticum urartu57.4928.6987.86280forward
CNT30721807Arabidopsis halleriTriticum spelta40.2521.888.27196forward
CNT30338600Arabidopsis halleriEragrostis tef56.8857.7187.36277forward
CNT30363108Arabidopsis halleriSorghum bicolor55.0333.586.19268forward
CNT30423787Arabidopsis halleriPapaver somniferum57.0814.9289.57278forward
CNT30570869Arabidopsis halleriVitis vinifera30.644.7488.59149forward
CNT30704438Arabidopsis halleriPrunus avium17.2534.8591.6784forward
CNT30645139Arabidopsis halleriCannabis sativa37.9967.0391.35185forward
CNT3024873Arabidopsis halleriPopulus trichocarpa34.529.7989.88168forward
CNT30323623Arabidopsis halleriAsparagus officinalis13.3520.8387.6965forward
CNT30120727Arabidopsis halleriCitrus clementina57.2950.7388.17279forward
CNT30101083Arabidopsis halleriOryza rufipogon57.2952.2587.1279forward
CNT30116334Arabidopsis halleriOryza nivara57.2945.7486.74279forward
CNT30594327Arabidopsis halleriEragrostis curvula53.874.0188.17262forward
CNT30726402Arabidopsis halleriLupinus angustifolius56.6757.8687.32276forward
CNT3039699Arabidopsis halleriMarchantia polymorpha26.4915.1684.5129forward

Expression of CNT30480842

Peptides detected in this lncRNA

>peptide 1 (46 aa)
MSMVIPRSLSALSLSKTHAYLKDLLFISAASFSNLSMTRLSIPPNL*

>peptide 2 (69 aa)
KEADITNITDKRCGYLVTTADHLLDTKGESKESMLTGLTILGDTSLKTTSGGVNDKDGTISLGASMTVQ*

Sequence

>CNT30480842
AAAAAGAAGCAGATATCACAAACATAACAGATAAAAGATGTGGTTACCTTGTTACAACAGCAGATCATTTGCTTGACACCAAGGGTGAAAGCAAGGAGAG
CATGCTCACGGGTCTGACCATCCTTGGAGATACCAGCCTCAAAACCACCAGTGGTGGAGTCAATGATAAGGACGGCACAATCAGCCTGGGAGCATCAATG
ACAGTGCAGTAGTACTTGGTGGTCTCGAACTTCCAGAGAGCAATGTCAATGGTGATACCACGCTCTCTCTCAGCCTTAAGTTTGTCCAAAACCCATGCGT
ACTTGAAGGACCTCTTGTTCATCTCAGCAGCCTCCTTCTCGAACCTCTCAATGACACGCTTGTCAATACCTCCCAACTTGTAGATCAAGTGTCCAGTGGT
GGTAGATTTACCAGAATCGACGTGGCCAATGACCACAATGTTGATGTGAAACTTCTCTTTACCCATGGTTACTTGTCAAGTAAATCT