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Detailed information on CNT3093993


BLAST search results

BLAST vs Swiss-Prot:
sp|P34823|EF1A2_DAUCA, E-value = 6e-108

BLAST vs NONCODE:
NONMEST004097, E-value = 2e-166

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672466Solanum tuberosumSetaria viridis60.3487.9987.94315forward
CNT30520930Solanum tuberosumSetaria italica31.860.8188.55166forward
CNT30546688Solanum tuberosumIpomoea triloba82.3810090.47430forward
CNT30698284Solanum tuberosumQuercus lobata25.6746.8593.28134forward
CNT30378189Solanum tuberosumArabidopsis thaliana52.8766.8387.68276forward
CNT30727591Solanum tuberosumCorchorus capsularis88.8917.1990.09464forward
CNT30380125Solanum tuberosumManihot esculenta88.8938.789.87464forward
CNT30629687Solanum tuberosumVigna unguiculata32.768.6691.81171forward
CNT30195181Solanum tuberosumPisum sativum83.3391.7787.59435forward
CNT30505987Solanum tuberosumNicotiana attenuata16.2825.8495.2985forward
CNT30712097Solanum tuberosumGlycine max64.7528.3389.05338forward
CNT30160107Solanum tuberosumPistacia vera83.3397.3288.97435forward
CNT30637620Solanum tuberosumCapsicum annuum52.6814.3292275forward
CNT30288144Solanum tuberosumTriticum aestivum64.7591.3589.05338forward
CNT30224124Solanum tuberosumHordeum vulgare56.799.6687.5296forward
CNT30386294Solanum tuberosumTriticum turgidum64.3791.388.99336forward
CNT30562819Solanum tuberosumActinidia chinensis60.1562.388.54314forward
CNT30590647Solanum tuberosumMusa acuminata27.7846.4787.59145forward
CNT3084119Solanum tuberosumVigna radiata89.0826.1286.88465forward
CNT30233912Solanum tuberosumBrassica oleracea42.7299.5591.03223forward
CNT30509848Solanum tuberosumSolanum lycopersicum42.5396.5296.85222forward
CNT30247994Solanum tuberosumAvena sativa64.7522.8487.87338forward
CNT30658093Solanum tuberosumTriticum dicoccoides68.0181.2488.45355forward
CNT30312075Solanum tuberosumCamelina sativa40.6137.7287.74212forward
CNT30614135Solanum tuberosumArabis alpina88.8929.7490.09464forward
CNT30450104Solanum tuberosumSaccharum spontaneum17.6222.0684.7892forward
CNT30608684Solanum tuberosumGossypium raimondii77.3995.9689.85404forward
CNT3067093Solanum tuberosumLeersia perrieri50.3858.8487.83263forward
CNT30646927Solanum tuberosumRosa chinensis55.3686.0188.24289forward
CNT30625732Solanum tuberosumDaucus carota25.6762.6285.82134forward
CNT30689637Solanum tuberosumTriticum urartu88.8947.5487.72464forward
CNT30721809Solanum tuberosumTriticum spelta46.7416.1790.98244forward
CNT30338600Solanum tuberosumEragrostis tef86.9794.5887.67454forward
CNT30480842Solanum tuberosumArabidopsis halleri52.6856.4788.36275forward
CNT30363108Solanum tuberosumSorghum bicolor66.2843.2586.71346forward
CNT30355843Solanum tuberosumLactuca sativa43.6827.0586.84228forward
CNT30483063Solanum tuberosumChara braunii15.936.7384.3483forward
CNT30423787Solanum tuberosumPapaver somniferum89.8525.1788.49469forward
CNT30570869Solanum tuberosumVitis vinifera63.7910089.19333forward
CNT30704438Solanum tuberosumPrunus avium23.9551.8788125forward
CNT30645139Solanum tuberosumCannabis sativa45.0285.1490.21235forward
CNT3031228Solanum tuberosumTheobroma cacao21.8445.9787.72114forward
CNT3024873Solanum tuberosumPopulus trichocarpa32.7630.3292.4171forward
CNT30323623Solanum tuberosumAsparagus officinalis32.9555.1381.4172forward
CNT30120974Solanum tuberosumCitrus clementina88.8976.5788.79464forward
CNT30101083Solanum tuberosumOryza rufipogon86.7884.8387.2453forward
CNT30116334Solanum tuberosumOryza nivara81.87087.82427forward
CNT30594390Solanum tuberosumEragrostis curvula54.0299.388.3282forward
CNT30726403Solanum tuberosumLupinus angustifolius88.5196.8687.01462forward

Expression of CNT3093993

Peptides detected in this lncRNA

>peptide 1 (83 aa)
MFTGLTIFRDTSFKTTSGGVDNEDSTVSLGGTSDHILDEVPVTRGINHSAVVLSGLKLPQSNINGDTTLTFGLKFVKHPGILE*

>peptide 2 (44 aa)
MVIPRSRSALSLSSTQAYLNDLLFISAASFSNLSITRLSIPPSL*

Sequence

>CNT3093993
CTCTAATTAACAATTAATTCCATCTACGAATAAAAGCAAACCTTGTTACAGCAGCATATCATTTGTTTGACACCAAGGGTGAAAGCAAGCAATGCATGTT
CACGGGTCTGACCATCTTTAGAGATACCAGCTTCAAAACCACCAGTGGTGGAGTCGATAATGAGGACAGCACAGTCAGCCTGGGAGGTACCAGTGATCAT
ATTCTTGATGAAGTCCCTGTGACCAGGGGCATCAATCACAGTGCAGTAGTACTTAGTGGTCTCAAACTTCCACAAAGCAATATCAATGGTGATACCACGC
TCACGTTCGGCCTTAAGTTTGTCAAGCACCCAGGCATACTTGAATGACCTCTTGTTCATCTCAGCAGCTTCCTTCTCAAACCTCTCAATAACACGCTTGT
CAATACCACCAAGCTTGTAGATCAAGTGACCAGTTGTGGTCGACTTACCAGAGTCGACATGACCAATGACCACAATACTGATGTGAATCTTCTCTTTACC
CATCTTGAGTTACTTAAAGACT