Detailed information on CNT30368333


BLAST search results

BLAST vs Swiss-Prot:
sp|Q41803|EF1A_MAIZE, E-value = 2e-41

BLAST vs NONCODE:
NONCQUT004692, E-value = 4e-64

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672466Sorghum bicolorSetaria viridis72.4954.4795.9195forward
CNT30520930Sorghum bicolorSetaria italica91.8290.4891.5247forward
CNT30378189Sorghum bicolorArabidopsis thaliana72.4947.2292.31195forward
CNT30727589Sorghum bicolorCorchorus capsularis7156.1890.58191forward
CNT30195335Sorghum bicolorPisum sativum72.4946.7688.21195forward
CNT30637620Sorghum bicolorCapsicum annuum719.9590.05191forward
CNT30224124Sorghum bicolorHordeum vulgare72.4965.6693.33195forward
CNT30509848Sorghum bicolorSolanum lycopersicum72.4984.7891.28195forward
CNT30625732Sorghum bicolorDaucus carota73.6192.5287.37198forward
CNT30721628Sorghum bicolorTriticum spelta57.6246.8393.55155forward
CNT30570869Sorghum bicolorVitis vinifera72.4958.5688.21195forward
CNT30704438Sorghum bicolorPrunus avium7179.2590.05191forward
CNT30644460Sorghum bicolorCannabis sativa67.6660.8788.46182forward
CNT30594407Sorghum bicolorEragrostis curvula72.4968.6695.9195forward

Expression of CNT30368333

Peptides detected in this lncRNA

>peptide 1 (88 aa)
LDSKCESKESMLTGLAILGDTSLKTTSGGVNDKNSTVSLGSTSDHILDEVTVSRGINDSAVVLGDQVASGGRLARVDMANDHNVDVSLL

>peptide 2 (61 aa)
CLTPSVKARRACSRVWPSLEIPASKPPVVESMIRTAQSAWEVPVIIFLMKSRCPGASMTVQ*

Sequence

>CNT30368333
TGCTTGACTCCAAGTGTGAAAGCAAGGAGAGCATGCTCACGGGTCTGGCCATCCTTGGAGATACCAGCCTCAAAACCACCAGTGGTGGAGTCAATGATAA
GAACAGCACAGTCAGCCTGGGAAGTACCAGTGATCATATTCTTGATGAAGTCACGGTGTCCAGGGGCATCAATGACAGTGCAGTAGTACTTGGTGATCAG
GTGGCCAGTGGTGGTCGACTTGCCAGAGTCGACATGGCCAATGACCACAATGTTGATGTGAGTCTTCTC