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Detailed information on CNT30727589


BLAST search results

BLAST vs Swiss-Prot:
sp|Q41803|EF1A_MAIZE, E-value = 3e-72

BLAST vs NONCODE:
NONMEST004097, E-value = 4e-120

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30520930Corchorus capsularisSetaria italica47.6559.3490.74162forward
CNT30378189Corchorus capsularisArabidopsis thaliana81.1866.8390.22276forward
CNT30637620Corchorus capsularisCapsicum annuum82.9414.6991.49282forward
CNT30224124Corchorus capsularisHordeum vulgare87.0699.6689.86296forward
CNT30590647Corchorus capsularisMusa acuminata41.4745.1992.2141forward
CNT30509848Corchorus capsularisSolanum lycopersicum67.6510091.74230forward
CNT30625732Corchorus capsularisDaucus carota39.4162.6288.81134forward
CNT30368333Corchorus capsularisSorghum bicolor56.187190.58191forward
CNT30704438Corchorus capsularisPrunus avium37.6553.1192.19128forward
CNT30594407Corchorus capsularisEragrostis curvula82.9499.388.65282forward

Expression of CNT30727589

Peptides detected in this lncRNA

>peptide 1 (49 aa)
MSRSINDSAVVLSCLELPEGNINGDTTFTLSLKLVKNPGILKGPLIRLT*

>peptide 2 (37 aa)
HLVAAANHLLDTKGKSKQSMLTGLTILRDTGFKTTSG*

>peptide 3 (30 aa)
MMRTAQSACEVPVIMFLIKSRCPGASMTVQ*

Sequence

>CNT30727589
CACCTTGTTGCAGCAGCAAATCATTTGCTTGACACCAAGGGTAAAAGCAAGCAAAGCATGCTCACGGGTCTGACCATCCTTAGAGATACCGGCTTCAAAA
CCACCAGTGGTTGAGTCAATGATGAGAACAGCACAGTCAGCCTGTGAGGTACCAGTAATCATGTTCTTGATAAAGTCACGATGTCCAGGAGCATCAATGA
CAGTGCAGTAGTACTTAGTTGTCTCGAACTTCCAGAGGGCAATATCAATGGTGATACCACGTTCACGCTCAGCCTTAAGCTTGTCAAGAACCCAGGCATA
CTTAAAGGACCTCTTATTCGCTTGACCTGAAGCTCTCGTC