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Detailed information on CNT30509848

BLAST search results

BLAST vs Swiss-Prot:
sp|Q41803|EF1A_MAIZE, E-value = 6e-48

BLAST vs NONCODE:
NONMEST004097, E-value = 1e-72

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30672466	Solanum lycopersicum	Setaria viridis	100	64.25	89.57	230	forward
CNT30520930	Solanum lycopersicum	Setaria italica	72.17	60.81	90.36	166	forward
CNT30546688	Solanum lycopersicum	Ipomoea triloba	96.52	51.63	91.44	222	forward
CNT30378189	Solanum lycopersicum	Arabidopsis thaliana	95.65	53.27	89.55	220	forward
CNT30727589	Solanum lycopersicum	Corchorus capsularis	100	67.65	91.74	230	forward
CNT30195181	Solanum lycopersicum	Pisum sativum	94.35	45.78	89.86	217	forward
CNT30709121	Solanum lycopersicum	Glycine max	70.87	40.65	88.34	163	forward
CNT30160107	Solanum lycopersicum	Pistacia vera	96.52	49.66	89.19	222	forward
CNT30637620	Solanum lycopersicum	Capsicum annuum	96.52	11.56	95.05	222	forward
CNT3093993	Solanum lycopersicum	Solanum tuberosum	96.52	42.53	96.85	222	forward
CNT30288144	Solanum lycopersicum	Triticum aestivum	46.09	28.65	88.68	106	forward
CNT30224124	Solanum lycopersicum	Hordeum vulgare	100	77.44	88.26	230	forward
CNT30386294	Solanum lycopersicum	Triticum turgidum	45.22	28.26	88.46	104	forward
CNT30562819	Solanum lycopersicum	Actinidia chinensis	39.13	17.86	87.78	90	forward
CNT30590647	Solanum lycopersicum	Musa acuminata	63.04	46.47	88.97	145	forward
CNT30233912	Solanum lycopersicum	Brassica oleracea	21.3	21.88	91.84	49	forward
CNT30658093	Solanum lycopersicum	Triticum dicoccoides	53.48	28.15	87.8	123	forward
CNT30608684	Solanum lycopersicum	Gossypium raimondii	74.78	40.86	90.7	172	forward
CNT30646927	Solanum lycopersicum	Rosa chinensis	36.52	25	90.48	84	forward
CNT30625732	Solanum lycopersicum	Daucus carota	58.7	63.08	86.67	135	forward
CNT30689637	Solanum lycopersicum	Triticum urartu	100	23.57	87.83	230	forward
CNT30721628	Solanum lycopersicum	Triticum spelta	75.65	52.57	87.93	174	forward
CNT30338600	Solanum lycopersicum	Eragrostis tef	96.52	46.25	89.64	222	forward
CNT30480842	Solanum lycopersicum	Arabidopsis halleri	58.7	27.72	91.85	135	forward
CNT30368333	Solanum lycopersicum	Sorghum bicolor	84.78	72.49	91.28	195	forward
CNT30354785	Solanum lycopersicum	Lactuca sativa	72.61	25.61	83.23	167	forward
CNT30570869	Solanum lycopersicum	Vitis vinifera	96.52	66.67	90.54	222	forward
CNT30704438	Solanum lycopersicum	Prunus avium	56.09	53.53	90.7	129	forward
CNT30644460	Solanum lycopersicum	Cannabis sativa	84.35	64.88	89.18	194	forward
CNT30323623	Solanum lycopersicum	Asparagus officinalis	66.52	49.04	82.35	153	forward
CNT30120974	Solanum lycopersicum	Citrus clementina	96.52	36.63	90.09	222	forward
CNT30101083	Solanum lycopersicum	Oryza rufipogon	96.09	41.39	88.69	221	forward
CNT30116334	Solanum lycopersicum	Oryza nivara	84.78	31.97	89.74	195	forward
CNT30594407	Solanum lycopersicum	Eragrostis curvula	100	80.99	90	230	forward
CNT30726347	Solanum lycopersicum	Lupinus angustifolius	93.04	44.86	88.32	214	forward

Expression of CNT30509848

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MRTAQSAWEVPVIIFLIKSLCPGASITVQ*

>peptide 2 (75 aa)
LVVAANHLLDTKGESKQCMFTGLTILRDTSFKTTSGGVNNEDSTVSLGGTSDHILDKVPVSRGINHSAVVLGGLKL

Sequence

>CNT30509848
CTTGTTGTAGCAGCAAATCATTTGCTTGACACCAAGGGTGAAAGCAAGCAATGCATGTTCACGGGTCTGACCATCCTTAGAGATACCAGCTTCAAAACCA
CCAGTGGTGGAGTCAATAATGAGGACAGCACAGTCAGCCTGGGAGGTACCAGTGATCATATTCTTGATAAAGTCCCTGTGTCCAGGGGCATCAATCACAG
TGCAGTAGTACTTGGTGGTCTCAAACTTCC