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Detailed information on CNT30386294


BLAST search results

BLAST vs Swiss-Prot:
sp|P34824|EF1A1_HORVU, E-value = 4e-75

BLAST vs NONCODE:
NONMEST004097, E-value = 4e-114

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672934Triticum turgidumSetaria viridis86.9657.9791.25320forward
CNT30520930Triticum turgidumSetaria italica23.131.1489.4185forward
CNT30546688Triticum turgidumIpomoea triloba82.6170.787.5304forward
CNT30698284Triticum turgidumQuercus lobata36.4146.8588.06134forward
CNT30378189Triticum turgidumArabidopsis thaliana39.9535.5990.48147forward
CNT30195181Triticum turgidumPisum sativum91.5871.187.83337forward
CNT30712097Triticum turgidumGlycine max91.0328.0886.57335forward
CNT30160107Triticum turgidumPistacia vera84.2469.3589.68310forward
CNT3093993Triticum turgidumSolanum tuberosum91.364.3788.99336forward
CNT30288144Triticum turgidumTriticum aestivum98.197.57100361forward
CNT30224124Triticum turgidumHordeum vulgare45.6556.5794.05168forward
CNT30562819Triticum turgidumActinidia chinensis89.465.2889.06329forward
CNT30590647Triticum turgidumMusa acuminata36.9643.5988.24136forward
CNT30233912Triticum turgidumBrassica oleracea59.7898.2189.55220forward
CNT30509848Triticum turgidumSolanum lycopersicum28.2645.2288.46104forward
CNT30658093Triticum turgidumTriticum dicoccoides10084.21100368forward
CNT30312075Triticum turgidumCamelina sativa57.6137.7291.04212forward
CNT30450104Triticum turgidumSaccharum spontaneum25.8222.7891.5895forward
CNT30608684Triticum turgidumGossypium raimondii91.379.8186.31336forward
CNT30218533Triticum turgidumKalanchoe fedtschenkoi30.7121.7387.61113forward
CNT3067093Triticum turgidumLeersia perrieri70.9258.3994.25261forward
CNT30646927Triticum turgidumRosa chinensis85.8794.0587.66316forward
CNT30625732Triticum turgidumDaucus carota23.9141.1287.588forward
CNT30689637Triticum turgidumTriticum urartu98.9137.397.8364forward
CNT30721809Triticum turgidumTriticum spelta69.0216.8394.09254forward
CNT30338600Triticum turgidumEragrostis tef92.3970.8392.35340forward
CNT30480842Triticum turgidumArabidopsis halleri76.0957.4987.14280forward
CNT30363108Triticum turgidumSorghum bicolor91.8542.2590.24338forward
CNT30355843Triticum turgidumLactuca sativa61.6826.9386.78227forward
CNT30483063Triticum turgidumChara braunii31.2550.8886.09115forward
CNT30423787Triticum turgidumPapaver somniferum91.0317.9886.87335forward
CNT30570869Triticum turgidumVitis vinifera56.2562.1686.96207forward
CNT30704438Triticum turgidumPrunus avium24.4637.349090forward
CNT30645139Triticum turgidumCannabis sativa63.8685.1490.21235forward
CNT3031228Triticum turgidumTheobroma cacao30.1644.7687.39111forward
CNT30323623Triticum turgidumAsparagus officinalis33.1539.185.25122forward
CNT30120727Triticum turgidumCitrus clementina91.0360.9189.25335forward
CNT30101083Triticum turgidumOryza rufipogon91.5863.1191.69337forward
CNT30585568Triticum turgidumEchinochloa crusgalli26.919.390.9199forward
CNT30116334Triticum turgidumOryza nivara91.5855.2591.99337forward
CNT30594327Triticum turgidumEragrostis curvula70.9273.7391.57261forward
CNT30726402Triticum turgidumLupinus angustifolius91.5870.6588.13337forward

Expression of CNT30386294

Peptides detected in this lncRNA

>peptide 1 (91 aa)
STISLGGTSDHVLDEITVTRSINDSARVLGGLELPQSNINGDTSLTLSLELVKHPGVLERPLVHLSGFLLEPLDHTLVNASKLVDEVASRG*

>peptide 2 (61 aa)
MTVHEYLVVSNFHRAISMVIPLSRSALSLSSTQAYLKDLLFISAASFSNLSITRLSMPPSL*

>peptide 3 (37 aa)
MRWPVVVDLPESTWPMTTMLMWIFSFPMAAGAVNYLHR

Sequence

>CNT30386294
AGCACAATCAGCCTGGGAGGTACCAGTGATCATGTTCTTGATGAAATCACGGTGACCAGGAGCATCAATGACAGTGCACGAGTACTTGGTGGTCTCGAAC
TTCCACAGAGCAATATCAATGGTGATACCTCTCTCACGCTCAGCCTTGAGCTTGTCAAGCACCCAGGCGTACTTGAAAGACCTCTTGTTCATCTCAGCGG
CTTCCTTCTCGAACCTCTCGATCACACGCTTGTCAATGCCTCCAAGCTTGTAGATGAGGTGGCCAGTCGTGGTTGACTTGCCAGAGTCGACATGGCCAAT
GACCACAATGCTGATGTGGATCTTCTCCTTTCCCATGGCTGCTGGAGCTGTTAACTACCTGCATAGAC