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Detailed information on CNT30608684


BLAST search results

BLAST vs Swiss-Prot:
sp|O49169|EF1A_MANES, E-value = 7e-94

BLAST vs NONCODE:
NONMEST004097, E-value = 5e-157

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672934Gossypium raimondiiSetaria viridis75.5357.6187.74318forward
CNT30520930Gossypium raimondiiSetaria italica38.4859.3489.51162forward
CNT30546688Gossypium raimondiiIpomoea triloba89.3187.4488.56376forward
CNT30698284Gossypium raimondiiQuercus lobata32.7848.2592.75138forward
CNT30378189Gossypium raimondiiArabidopsis thaliana52.4953.5190.95221forward
CNT30727592Gossypium raimondiiCorchorus capsularis99.5231.6993.56419forward
CNT30380125Gossypium raimondiiManihot esculenta96.9134.0391.18408forward
CNT30629687Gossypium raimondiiVigna unguiculata40.388.6190.59170forward
CNT30195181Gossypium raimondiiPisum sativum95.9685.2388.12404forward
CNT30712097Gossypium raimondiiGlycine max79.5728.0885.67335forward
CNT30160107Gossypium raimondiiPistacia vera90.7485.4689.53382forward
CNT30637620Gossypium raimondiiCapsicum annuum53.4411.7290.22225forward
CNT3093993Gossypium raimondiiSolanum tuberosum95.9677.3989.85404forward
CNT30288144Gossypium raimondiiTriticum aestivum80.2991.3586.39338forward
CNT30224124Gossypium raimondiiHordeum vulgare56.2979.888.61237forward
CNT30386294Gossypium raimondiiTriticum turgidum79.8191.386.31336forward
CNT30562819Gossypium raimondiiActinidia chinensis79.3366.2786.23334forward
CNT30590647Gossypium raimondiiMusa acuminata32.7844.2389.13138forward
CNT3084119Gossypium raimondiiVigna radiata95.9622.787.13404forward
CNT30233912Gossypium raimondiiBrassica oleracea50.3694.6488.21212forward
CNT30509848Gossypium raimondiiSolanum lycopersicum40.8674.7890.7172forward
CNT30247994Gossypium raimondiiAvena sativa80.2922.8488.46338forward
CNT30658093Gossypium raimondiiTriticum dicoccoides80.2977.3586.39338forward
CNT30312075Gossypium raimondiiCamelina sativa50.3637.7290.09212forward
CNT30614135Gossypium raimondiiArabis alpina96.9126.1591.42408forward
CNT30450104Gossypium raimondiiSaccharum spontaneum21.8522.0688.0492forward
CNT30218533Gossypium raimondiiKalanchoe fedtschenkoi26.3721.3586.49111forward
CNT3067093Gossypium raimondiiLeersia perrieri61.7658.1787.31260forward
CNT30646927Gossypium raimondiiRosa chinensis75.0694.0591.14316forward
CNT30625732Gossypium raimondiiDaucus carota31.1261.2188.55131forward
CNT30689637Gossypium raimondiiTriticum urartu96.6741.786.73407forward
CNT30721809Gossypium raimondiiTriticum spelta60.3316.8389.76254forward
CNT30338600Gossypium raimondiiEragrostis tef96.918587.5408forward
CNT30480842Gossypium raimondiiArabidopsis halleri65.3256.4787.27275forward
CNT30363108Gossypium raimondiiSorghum bicolor82.1943.2585.55346forward
CNT30355843Gossypium raimondiiLactuca sativa54.3927.1689.52229forward
CNT30483063Gossypium raimondiiChara braunii27.0850.4485.96114forward
CNT30423787Gossypium raimondiiPapaver somniferum96.6721.8589.19407forward
CNT30570869Gossypium raimondiiVitis vinifera66.2783.7888.17279forward
CNT30704438Gossypium raimondiiPrunus avium30.453.1189.06128forward
CNT30645139Gossypium raimondiiCannabis sativa55.8285.1491.06235forward
CNT3024873Gossypium raimondiiPopulus trichocarpa40.3830.1489.41170forward
CNT30323623Gossypium raimondiiAsparagus officinalis24.733.3388.46104forward
CNT30120974Gossypium raimondiiCitrus clementina97.6267.8290.27411forward
CNT30101083Gossypium raimondiiOryza rufipogon96.6776.2287.96407forward
CNT30585568Gossypium raimondiiEchinochloa crusgalli22.818.7185.4296forward
CNT30116334Gossypium raimondiiOryza nivara96.6766.7288.21407forward
CNT30594390Gossypium raimondiiEragrostis curvula54.1680.2889.91228forward
CNT30726402Gossypium raimondiiLupinus angustifolius96.9185.5388.73408forward

Expression of CNT30608684

Peptides detected in this lncRNA

>peptide 1 (42 aa)
MSRGINDSTVVFGSLKLPEGNIDGNTTFTLGLKLVKHPCILK*

>peptide 2 (44 aa)
MVIPRSRSALSLSSTHAYLNDLLFISAASFSNLSITRLSIPPSL*

>peptide 3 (29 aa)
MTSGCRLPRVDMADDHNVDVNLLLTHYRTR

>peptide 4 (32 aa)
MTFCSSQQPPSQTSQSHACQYHQACRSNDQWL*

>peptide 5 (29 aa)
MRTAQSACEVPVIMFLMKSRCPGASMTVQ*

Sequence

>CNT30608684
ATGCTCACGTGTCTGACCATCCTTTGAGATACCAGCTTCAAAACCACCAGTGGTCGAGTCGATAATGAGAACAGCACAGTCAGCCTGTGAGGTACCAGTA
ATCATGTTCTTGATGAAGTCACGATGTCCAGGGGCATCAATGACAGTACAGTAGTATTTGGTAGTCTCAAACTTCCAGAGGGCAATATCGATGGTAATAC
CACGTTCACGCTCGGCCTTAAGCTTGTCAAGCACCCATGCATACTTAAATGACCTTTTGTTCATCTCAGCAGCCTCCTTCTCAAACCTCTCAATCACACG
CTTGTCAATACCACCAAGCTTGTAGATCAAATGACCAGTGGTTGTAGACTTCCCAGAGTCGACATGGCCGATGACCACAATGTTGATGTGAACCTTCTCC
TTACCCATTATAGAACTCGAG