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Detailed information on CNT3039699


BLAST search results

BLAST vs Swiss-Prot:
sp|Q41011|EF1A_PEA, E-value = 2e-106

BLAST vs NONCODE:
NONBNAT007048, E-value = 1e-48

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30518292Marchantia polymorphaJuglans regia32.5560.3584.12277forward
CNT30629687Marchantia polymorphaVigna unguiculata30.213.0184.82257forward
CNT30121467Marchantia polymorphaPhyscomitrium patens16.5721.2783.69141forward
CNT30224124Marchantia polymorphaHordeum vulgare14.4541.4188.62123forward
CNT30590647Marchantia polymorphaMusa acuminata14.8140.3884.92126forward
CNT30680463Marchantia polymorphaTriticum urartu55.2369.0281.7470forward
CNT30721628Marchantia polymorphaTriticum spelta14.8138.0789.68126forward
CNT30480842Marchantia polymorphaArabidopsis halleri15.1626.4984.5129forward
CNT30368448Marchantia polymorphaSorghum bicolor32.248.5883.21274forward
CNT30423983Marchantia polymorphaPapaver somniferum29.9631.6483.92255forward
CNT30120727Marchantia polymorphaCitrus clementina15.1623.4584.5129forward
CNT30101083Marchantia polymorphaOryza rufipogon14.122.4789.17120forward

Expression of CNT3039699

Peptides detected in this lncRNA

>peptide 1 (46 aa)
MLSKASRRVGPLYQSRLVDRSIILSPSNPEIGTKGILSGLYPTFFK*

>peptide 2 (80 aa)
MSVAPIHFFLAAALVTLAPEGSFFSTALITPTATVCLMSRTANRPRGGYSAKVTSIPGLMTPVSTRPTGTVPIPPILYTS*

Sequence

>CNT3039699
AAGGTTGATATGAAAATGATACAGAACTCAATGTGTCAAAATCGACTTTAACACCATAATCACGAAACATATCCTACGGTGTCCTCCAAGCCTTGCCACC
GCCTGTCTAGGACCCAAGTCTGCTGAAGGCGGGCAAGAAACCTCCTCCTATCGAGCAATCGGCAAGGCTTAGCGCATCTGTCGTAACGGTCAACAGATTC
AGGATCGTCCGTTATCCGGAATGTGATGTCAGTCGCCCCGATTCACTTTTTCTTGGCGGCGGCCTTGGTGACCTTGGCGCCAGAGGGCTCCTTCTTTTCG
ACGGCTTTGATAACTCCGACGGCGACGGTCTGCCTCATGTCGCGCACGGCGAATCGTCCAAGAGGTGGGTACTCAGCGAAGGTCACAAGCATACCGGGCT
TGATGACTCCAGTCTCCACTCGTCCCACTGGGACAGTTCCAATTCCTCCAATCTTGTACACATCCTGAAGGGGCAACCTGAGGGGCTTGTCGGAAGGCCT
CTTAGGCTCACTGATGCTGTCCAAAGCTTCGAGGAGGGTAGGTCCCTTGTACCAGTCAAGGTTAGTAGATCGCTCAATCATATTGTCTCCTTCGAATCCA
GAAATTGGCACGAAGGGAATCTTGTCGGGGTTGTACCCGACCTTCTTCAAATAGTTAGCCACCTCCTTGATGATCTCGTCGTAACGGCCCTTCGAGTACT
TCGGGGTGGTTGCATCCATCTTGTTGCAGCAGCAGATCATCTGCTTCACACCCAGAGTGAAAGCCAGGAGAGCGTGCTCTCGGGTCTGGCCATCCTTAGA
GATACCTGCCTCGAATCCTCCGGTGGTTGAGTCGATGATGAGAACGGCGCA