Detailed information on CNT30120974


BLAST search results

BLAST vs Swiss-Prot:
sp|Q41803|EF1A_MAIZE, E-value = 7e-108

BLAST vs NONCODE:
NONMEST004097, E-value = 2e-169

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30520930Citrus clementinaSetaria italica27.5661.1791.62167forward
CNT30546688Citrus clementinaIpomoea triloba70.9610090.47430forward
CNT30378189Citrus clementinaArabidopsis thaliana45.0566.190.11273forward
CNT30727591Citrus clementinaCorchorus capsularis77.2317.3392.31468forward
CNT30380192Citrus clementinaManihot esculenta76.5720.3490.95464forward
CNT30195181Citrus clementinaPisum sativum76.2497.4787.66462forward
CNT30160107Citrus clementinaPistacia vera71.9597.5492.66436forward
CNT30637620Citrus clementinaCapsicum annuum46.5314.6991.84282forward
CNT3093993Citrus clementinaSolanum tuberosum76.5788.8988.79464forward
CNT30224124Citrus clementinaHordeum vulgare48.8499.6690.2296forward
CNT30562819Citrus clementinaActinidia chinensis54.9566.0788.59333forward
CNT3084119Citrus clementinaVigna radiata76.5726.0787.5464forward
CNT30509848Citrus clementinaSolanum lycopersicum36.6396.5290.09222forward
CNT30614135Citrus clementinaArabis alpina76.7329.8191.61465forward
CNT30608684Citrus clementinaGossypium raimondii67.8297.6290.27411forward
CNT30625732Citrus clementinaDaucus carota22.9464.9590.65139forward
CNT30689637Citrus clementinaTriticum urartu76.5747.5489.01464forward
CNT30338600Citrus clementinaEragrostis tef74.9294.5890.09454forward
CNT30423787Citrus clementinaPapaver somniferum76.5724.9190.09464forward
CNT30570869Citrus clementinaVitis vinifera54.9510089.79333forward
CNT30323623Citrus clementinaAsparagus officinalis23.144.8785140forward
CNT30101083Citrus clementinaOryza rufipogon74.7584.8390.29453forward
CNT30116334Citrus clementinaOryza nivara70.467089.7427forward
CNT30594390Citrus clementinaEragrostis curvula46.5399.390.43282forward
CNT30726403Citrus clementinaLupinus angustifolius76.2496.8688.31462forward

Expression of CNT30120974

Peptides detected in this lncRNA

>peptide 1 (48 aa)
HLVTAANHLLHTKGESKQSMLTSLTILGDTSFKTAGGGVNDEDGTVSL*

>peptide 2 (44 aa)
MVIPRSRSALSLSSTQAYLNDLLFISAASFSNLSITRLSIPPSL*

>peptide 3 (42 aa)
MSGSINDGAVVLGGLELPQGNINGNTTFTLSLELVEHPGVFE*

>peptide 4 (30 aa)
MMRTAQSACEVPVIMFLIKSRCPGASMTVQ*

>peptide 5 (41 aa)
MTSCSSQQLPSRTSRSHACQYHQACRSSVRWWSTFQSRHGR*

Sequence

>CNT30120974
CACCTTGTTACAGCAGCAAATCATCTGCTTCACACCAAGGGTGAAAGCAAGCAAAGCATGCTCACGAGTCTGACCATCCTTGGAGATACCAGCTTCAAAA
CCGCCGGTGGTGGAGTCAATGATGAGGACGGCACAGTCAGCCTGTGAGGTACCGGTAATCATGTTCTTGATAAAGTCACGATGTCCGGGAGCATCAATGA
CGGTGCAGTAGTACTTGGTGGTCTCGAACTTCCACAAGGCAATATCAATGGTAATACCACGTTCACGCTCAGCCTTGAGCTTGTCGAGCACCCAGGCGTA
TTTGAATGACCTCTTGTTCATCTCAGCAGCTTCCTTCTCGAACCTCTCGATCACACGCTTGTCAATACCACCAAGCTTGTAGATCAAGTGTCCGGTGGTG
GTCGACTTTCCAGAGTCGACATGGCCGATGACCACAATGTTGATGTGAGTCTTCTCCTTACCCATTATGCAAATCTAGAAAAAACCTGGAGCAAATAAAC
AGAACACAAATTCAGATAGATCCAATGCCAAAAATACATTAAGTATTTTGATAGAAATCCAATCCTCATACAGGAAACCAATGACAAAACAAGCCCAGTT
TTAACA