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Detailed information on CNT30116334


BLAST search results

BLAST vs Swiss-Prot:
sp|P35450|EFGC_PEA, E-value = 1e-09

BLAST vs NONCODE:
NONCQUT004692, E-value = 5e-87

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30520930Oryza nivaraSetaria italica28.5263.7493.1174forward
CNT30546688Oryza nivaraIpomoea triloba64.7591.8688.1395forward
CNT30698284Oryza nivaraQuercus lobata21.9746.8588.81134forward
CNT30378189Oryza nivaraArabidopsis thaliana39.0257.6391.6238forward
CNT30727591Oryza nivaraCorchorus capsularis7015.8188.52427forward
CNT30380230Oryza nivaraManihot esculenta76.8919.3389.98469forward
CNT30195181Oryza nivaraPisum sativum62.7980.887.47383forward
CNT30709121Oryza nivaraGlycine max67.7102.9981.6413forward
CNT30160107Oryza nivaraPistacia vera65.7489.7188.28401forward
CNT30637620Oryza nivaraCapsicum annuum40.1612.7689.39245forward
CNT3093993Oryza nivaraSolanum tuberosum7081.887.82427forward
CNT30288144Oryza nivaraTriticum aestivum56.2392.791.84343forward
CNT30224124Oryza nivaraHordeum vulgare41.6485.5294.49254forward
CNT30386294Oryza nivaraTriticum turgidum55.2591.5891.99337forward
CNT30562819Oryza nivaraActinidia chinensis51.1561.987.18312forward
CNT3084119Oryza nivaraVigna radiata68.3623.4386.33417forward
CNT30509848Oryza nivaraSolanum lycopersicum31.9784.7889.74195forward
CNT30247994Oryza nivaraAvena sativa57.8723.8592.07353forward
CNT30658093Oryza nivaraTriticum dicoccoides58.5281.6991.88357forward
CNT30312075Oryza nivaraCamelina sativa34.7537.7290.57212forward
CNT30614135Oryza nivaraArabis alpina7027.3788.99427forward
CNT30450104Oryza nivaraSaccharum spontaneum15.4122.5490.4394forward
CNT30608684Oryza nivaraGossypium raimondii66.7296.6788.21407forward
CNT30218533Oryza nivaraKalanchoe fedtschenkoi18.6921.9285.09114forward
CNT3067093Oryza nivaraLeersia perrieri45.2561.7495.65276forward
CNT30646927Oryza nivaraRosa chinensis48.3687.888.47295forward
CNT30625732Oryza nivaraDaucus carota22.7964.9586.33139forward
CNT30689637Oryza nivaraTriticum urartu7043.7592.51427forward
CNT30721807Oryza nivaraTriticum spelta41.1527.9295.62251forward
CNT30338600Oryza nivaraEragrostis tef71.1590.4293.32434forward
CNT30480842Oryza nivaraArabidopsis halleri45.7457.2986.74279forward
CNT30363108Oryza nivaraSorghum bicolor56.7243.2589.88346forward
CNT30355843Oryza nivaraLactuca sativa37.5427.1686.03229forward
CNT30423787Oryza nivaraPapaver somniferum7022.9287.59427forward
CNT30570869Oryza nivaraVitis vinifera48.8589.4986.91298forward
CNT30704438Oryza nivaraPrunus avium20.6652.2888.89126forward
CNT30645139Oryza nivaraCannabis sativa38.5285.1489.79235forward
CNT3031228Oryza nivaraTheobroma cacao18.244.7689.19111forward
CNT30323623Oryza nivaraAsparagus officinalis24.9248.7282.89152forward
CNT30120974Oryza nivaraCitrus clementina7070.4689.7427forward
CNT30101083Oryza nivaraOryza rufipogon71.4881.6599.08436forward
CNT30594407Oryza nivaraEragrostis curvula40.1686.2795.51245forward
CNT30726347Oryza nivaraLupinus angustifolius66.7285.3287.47407forward

Expression of CNT30116334

Peptides detected in this lncRNA

>peptide 1 (44 aa)
MVIPLSRSALSLSSTHAYLKDLLFISAASFSNLSITRLSIPPSL*

>peptide 2 (56 aa)
NKQVLDSSIITEEKNTRDIYLVAAADHLLHTKSESKKSVLTGLAILGDTSLKTTSG*

Sequence

>CNT30116334
AACAAACAAGTGCTAGACTCATCAATCATAACAGAAGAAAAAAACACTAGAGATATATACCTTGTTGCAGCAGCAGATCATCTGCTTCACACCAAGAGTG
AAAGCAAGAAGAGCGTGCTCACGGGTCTGGCCATCCTTGGAGATACCAGCCTCAAAACCACCAGTGGGTGAAAGCAAGAAGAGCGTGCTCACGGGTCTGG
CCATCCTTGGAGATACCAGCCTCAAAACCACCAGTGGTGGAGTCAATGATGAGCACGGCACAGTCAGCCTGGGAGGTACCAGTGATCATGTTCTTGATGA
AGTCACGGTGACCAGGGGCATCGATGACCGTGCAGTAGTACTTGGTGGTCTCGAACTTCCACAGGGCGATATCGATGGTGATACCTCTCTCACGCTCGGC
CTTGAGCTTGTCAAGCACCCACGCGTACTTGAAGGACCTCTTGTTCATCTCAGCGGCTTCCTTCTCGAACCTCTCAATCACACGCTTGTCGATACCTCCA
AGCTTGTAGATCAGATGGCCCGTGGTGGTCGACTTGCCGGAGTCGACGTGGCCAATGACCACAATGTTGATGTGCGTCTTCTCCTTACCCATGGTTGAAT
AAGGAGGAAG