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Detailed information on CNT30338600


BLAST search results

BLAST vs Swiss-Prot:
sp|Q41803|EF1A_MAIZE, E-value = 7e-105

BLAST vs NONCODE:
NONMEST004097, E-value = 5e-139

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672934Eragrostis tefSetaria viridis71.2561.9692.11342forward
CNT30520930Eragrostis tefSetaria italica36.2563.7494.25174forward
CNT30546688Eragrostis tefIpomoea triloba87.9298.1488.39422forward
CNT30698284Eragrostis tefQuercus lobata27.2945.891.6131forward
CNT30378189Eragrostis tefArabidopsis thaliana54.7963.6890.11263forward
CNT30727591Eragrostis tefCorchorus capsularis94.5816.8188.55454forward
CNT30195181Eragrostis tefPisum sativum93.7594.9487.33450forward
CNT30709121Eragrostis tefGlycine max86.04102.9982.81413forward
CNT30160107Eragrostis tefPistacia vera89.1795.7590.19428forward
CNT30637620Eragrostis tefCapsicum annuum56.6714.1788.24272forward
CNT3093993Eragrostis tefSolanum tuberosum94.5886.9787.67454forward
CNT30288144Eragrostis tefTriticum aestivum72.9294.5992350forward
CNT30224124Eragrostis tefHordeum vulgare58.9695.2992.93283forward
CNT30386294Eragrostis tefTriticum turgidum70.8392.3992.35340forward
CNT30562819Eragrostis tefActinidia chinensis68.7565.4887.27330forward
CNT30590647Eragrostis tefMusa acuminata27.0841.6788.46130forward
CNT30233912Eragrostis tefBrassica oleracea46.0498.6689.14221forward
CNT30509848Eragrostis tefSolanum lycopersicum46.2596.5289.64222forward
CNT30658093Eragrostis tefTriticum dicoccoides7582.3891.94360forward
CNT30312075Eragrostis tefCamelina sativa42.536.390.2204forward
CNT30608684Eragrostis tefGossypium raimondii8596.9187.5408forward
CNT30218533Eragrostis tefKalanchoe fedtschenkoi23.5421.7387.61113forward
CNT3067093Eragrostis tefLeersia perrieri56.2560.494.07270forward
CNT30646927Eragrostis tefRosa chinensis64.1791.6787.34308forward
CNT30625732Eragrostis tefDaucus carota28.1263.0885.19135forward
CNT30689637Eragrostis tefTriticum urartu95.6247.0391.72459forward
CNT30721809Eragrostis tefTriticum spelta53.7517.192.64258forward
CNT30480842Eragrostis tefArabidopsis halleri57.7156.8887.36277forward
CNT30363108Eragrostis tefSorghum bicolor70.4242.2590.24338forward
CNT30483063Eragrostis tefChara braunii23.9650.8886.96115forward
CNT30423787Eragrostis tefPapaver somniferum92.9223.9487.22446forward
CNT30570869Eragrostis tefVitis vinifera66.4695.888.09319forward
CNT30704438Eragrostis tefPrunus avium27.554.7789.39132forward
CNT30645139Eragrostis tefCannabis sativa47.2982.2588.99227forward
CNT3031228Eragrostis tefTheobroma cacao23.1244.7690.09111forward
CNT30323623Eragrostis tefAsparagus officinalis30.8347.4483.78148forward
CNT30120974Eragrostis tefCitrus clementina94.5874.9290.09454forward
CNT30101083Eragrostis tefOryza rufipogon94.7985.2193.19455forward
CNT30116334Eragrostis tefOryza nivara90.4271.1593.32434forward
CNT30594390Eragrostis tefEragrostis curvula57.597.1897.1276forward
CNT30726403Eragrostis tefLupinus angustifolius93.1293.7186.8447forward

Expression of CNT30338600

Peptides detected in this lncRNA

>peptide 1 (65 aa)
QQIICFTPRVKARRACSRVWPSFEIPASKPPVVESMIRTAQSAWEVPVIMFLMKSRCPGASMTVQ*

>peptide 2 (44 aa)
MVIPLSRSALSLSSTHAYLKDLLFISAASFSNLSITRLSMPPSL*

Sequence

>CNT30338600
AGCAGCAAATCATCTGCTTCACACCCAGGGTGAAAGCAAGGAGAGCATGCTCACGCGTCTGGCCATCCTTTGAGATACCGGCCTCAAAACCACCAGTGGT
GGAGTCGATGATAAGGACGGCACAGTCAGCCTGGGAGGTACCCGTGATCATGTTCTTGATGAAGTCACGGTGTCCAGGGGCATCAATGACAGTGCAGTAG
TACTTGGTGGTCTCGAACTTCCACAGAGCGATATCAATGGTGATACCTCTCTCACGCTCCGCCTTGAGCTTGTCCAGCACCCACGCGTACTTGAAGGACC
TCTTGTTCATTTCAGCTGCTTCTTTCTCAAACCTCTCGATCACACGCTTGTCGATGCCTCCAAGCTTGTAGATCAGGTGGCCAGTGGTGGTCGACTTTCC
GGAGTCGACATGGCCAATGACCACAATGTTGATGTGACTCTTCTCCTTACCCATGGCTGAAGGGAAGACTTAAACTGCGG