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Detailed information on CNT30233912


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672783Brassica oleraceaSetaria viridis90.1840.6492.08202forward
CNT30546688Brassica oleraceaIpomoea triloba98.6651.487.33221forward
CNT30378189Brassica oleraceaArabidopsis thaliana44.223.9798.9999forward
CNT30195181Brassica oleraceaPisum sativum97.3245.9987.16218forward
CNT30160107Brassica oleraceaPistacia vera97.3248.7789.91218forward
CNT3093993Brassica oleraceaSolanum tuberosum99.5542.7291.03223forward
CNT30288144Brassica oleraceaTriticum aestivum98.2159.4689.55220forward
CNT30224124Brassica oleraceaHordeum vulgare45.9834.6892.23103forward
CNT30386294Brassica oleraceaTriticum turgidum98.2159.7889.55220forward
CNT30562819Brassica oleraceaActinidia chinensis98.2143.6589.09220forward
CNT30590647Brassica oleraceaMusa acuminata34.822588.4678forward
CNT30509848Brassica oleraceaSolanum lycopersicum21.8821.391.8449forward
CNT30658093Brassica oleraceaTriticum dicoccoides98.2150.3489.55220forward
CNT30608684Brassica oleraceaGossypium raimondii94.6450.3688.21212forward
CNT3067093Brassica oleraceaLeersia perrieri90.6245.4190.64203forward
CNT30646927Brassica oleraceaRosa chinensis98.6665.7790.05221forward
CNT30689637Brassica oleraceaTriticum urartu98.2122.5490.45220forward
CNT30721807Brassica oleraceaTriticum spelta91.0722.6990.2204forward
CNT30338600Brassica oleraceaEragrostis tef98.6646.0489.14221forward
CNT30480842Brassica oleraceaArabidopsis halleri95.9844.1594.88215forward
CNT30363108Brassica oleraceaSorghum bicolor89.292588.5200forward
CNT30570869Brassica oleraceaVitis vinifera68.7546.2589.61154forward
CNT30645139Brassica oleraceaCannabis sativa89.2972.4691200forward
CNT30323623Brassica oleraceaAsparagus officinalis30.3621.7986.7668forward
CNT30120727Brassica oleraceaCitrus clementina97.3239.6491.28218forward
CNT30101083Brassica oleraceaOryza rufipogon91.0738.289.22204forward
CNT30585568Brassica oleraceaEchinochloa crusgalli33.4814.628875forward
CNT30594327Brassica oleraceaEragrostis curvula89.7356.7890.05201forward
CNT30726402Brassica oleraceaLupinus angustifolius94.6444.4487.74212forward

Expression of CNT30233912

Peptides detected in this lncRNA

>peptide 1 (46 aa)
MSMVIPRSRSALSLSKTHAYLKDLLFISAASFSNLSMTRLSIPPSL*

>peptide 2 (73 aa)
TRSINDGAVVLGGLELPESNVNGDTTLTLSLKFVQDPRVLEGPLVHLSSLLLEPLDDTLVNTTKLVDQVTSCGR

Sequence

>CNT30233912
GACCAGGAGCATCAATGACGGTGCAGTAGTACTTGGTGGTCTCGAACTTCCAGAGAGCAATGTCAATGGTGATACCACGCTCACGCTCAGCCTTAAGTTT
GTCCAAGACCCACGCGTACTTGAAGGACCTCTTGTTCATCTCAGCAGCCTCCTTCTCGAACCTCTCGATGACACGCTTGTCAATACCACCAAGCTTGTAG
ATCAAGTGACCAGTTGTGGTCGAT