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Detailed information on CNT30378189


BLAST search results

BLAST vs Swiss-Prot:
sp|O49169|EF1A_MANES, E-value = 6e-71

BLAST vs NONCODE:
NONCQUT004692, E-value = 6e-95

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672466Arabidopsis thalianaSetaria viridis66.176.2690.48273forward
CNT30520930Arabidopsis thalianaSetaria italica42.1363.7491.95174forward
CNT30546688Arabidopsis thalianaIpomoea triloba63.260.788.12261forward
CNT30698284Arabidopsis thalianaQuercus lobata27.3639.5191.15113forward
CNT30727589Arabidopsis thalianaCorchorus capsularis66.8381.1890.22276forward
CNT30195181Arabidopsis thalianaPisum sativum66.8358.2388.41276forward
CNT30709121Arabidopsis thalianaGlycine max40.1941.487.35166forward
CNT30160107Arabidopsis thalianaPistacia vera66.161.0788.28273forward
CNT30637620Arabidopsis thalianaCapsicum annuum66.114.2290.11273forward
CNT3093993Arabidopsis thalianaSolanum tuberosum66.8352.8787.68276forward
CNT30288144Arabidopsis thalianaTriticum aestivum37.7742.1690.38156forward
CNT30224124Arabidopsis thalianaHordeum vulgare66.191.9289.01273forward
CNT30386294Arabidopsis thalianaTriticum turgidum35.5939.9590.48147forward
CNT30564261Arabidopsis thalianaActinidia chinensis31.9646.9889.39132forward
CNT30590647Arabidopsis thalianaMusa acuminata35.1146.4788.28145forward
CNT30233912Arabidopsis thalianaBrassica oleracea23.9744.298.9999forward
CNT30509848Arabidopsis thalianaSolanum lycopersicum53.2795.6589.55220forward
CNT30658093Arabidopsis thalianaTriticum dicoccoides40.1937.9990.96166forward
CNT30608684Arabidopsis thalianaGossypium raimondii53.5152.4990.95221forward
CNT30218533Arabidopsis thalianaKalanchoe fedtschenkoi20.5816.3583.5385forward
CNT3067093Arabidopsis thalianaLeersia perrieri32.4529.9888.81134forward
CNT30646927Arabidopsis thalianaRosa chinensis31.2338.3990.7129forward
CNT30625732Arabidopsis thalianaDaucus carota32.6963.0892.59135forward
CNT30689637Arabidopsis thalianaTriticum urartu66.127.9791.21273forward
CNT30721628Arabidopsis thalianaTriticum spelta42.8653.4789.83177forward
CNT30338600Arabidopsis thalianaEragrostis tef63.6854.7990.11263forward
CNT30480842Arabidopsis thalianaArabidopsis halleri35.1129.7794.48145forward
CNT30368333Arabidopsis thalianaSorghum bicolor47.2272.4992.31195forward
CNT30570869Arabidopsis thalianaVitis vinifera66.181.9887.91273forward
CNT30704438Arabidopsis thalianaPrunus avium30.5152.2888.89126forward
CNT30644460Arabidopsis thalianaCannabis sativa49.3968.2391.67204forward
CNT3031228Arabidopsis thalianaTheobroma cacao27.645.9790.35114forward
CNT30323623Arabidopsis thalianaAsparagus officinalis38.9851.685.09161forward
CNT30120974Arabidopsis thalianaCitrus clementina66.145.0590.11273forward
CNT30101083Arabidopsis thalianaOryza rufipogon63.6849.2590.87263forward
CNT30116334Arabidopsis thalianaOryza nivara57.6339.0291.6238forward
CNT30594407Arabidopsis thalianaEragrostis curvula66.196.1391.94273forward
CNT30726347Arabidopsis thalianaLupinus angustifolius66.157.2388.28273forward

Expression of CNT30378189

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MIRTAQSAWEVPVIMFLMKSRCPGASMTVQ*

>peptide 2 (55 aa)
MVIPRSRSALRPLVHLSSLLLEPLDDTLVNTTKLIDQVTSCGRFSRINMTNDHNVN

>peptide 3 (77 aa)
LVTTANHLLDTKGESKKSVLTGLTILRDTSLKTSSGGVNDKNSTISLGGTSNHVLDEITMSWGINDCAVVLGGLELP*

Sequence

>CNT30378189
CTTGTTACAACAGCAAATCATCTGCTTGACACCAAGGGTGAAAGCAAGAAGAGCGTGCTCACGGGTCTGACCATCCTTAGAGATACCAGCCTCAAAACCT
CCAGTGGTGGAGTCAATGATAAGAACAGCACAATCAGCCTGGGAGGTACCAGTAATCATGTTCTTGATGAAATCACGATGTCCTGGGGCATCAATGACTG
TGCAGTAGTACTTGGTGGTCTCGAACTTCCATAGAGCAATATCGATGGTAATACCACGCTCACGCTCGGCCTTAAGACCTCTTGTTCATCTCAGCAGCCT
CCTTCTCGAACCTCTCGATGACACGCTTGTCAATACCACCAAGCTTATAGATCAAGTGACCAGTTGTGGTCGATTTTCCAGAATCAACATGACCAATGAC
CACAATGTTAATG