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Detailed information on CNT30704438

BLAST search results

BLAST vs Swiss-Prot:
sp|P43643|EF1A_TOBAC, E-value = 7e-29

BLAST vs NONCODE:
NONCQUT004692, E-value = 4e-42

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30672466	Prunus avium	Setaria viridis	52.28	35.2	89.68	126	forward
CNT30520930	Prunus avium	Setaria italica	86.72	76.56	85.17	209	forward
CNT30546688	Prunus avium	Ipomoea triloba	50.62	28.37	92.62	122	forward
CNT30378189	Prunus avium	Arabidopsis thaliana	52.28	30.51	88.89	126	forward
CNT30727589	Prunus avium	Corchorus capsularis	53.11	37.65	92.19	128	forward
CNT30195335	Prunus avium	Pisum sativum	54.77	31.65	94.7	132	forward
CNT30709121	Prunus avium	Glycine max	52.7	31.67	84.25	127	forward
CNT30160107	Prunus avium	Pistacia vera	53.11	28.64	92.19	128	forward
CNT3093993	Prunus avium	Solanum tuberosum	51.87	23.95	88	125	forward
CNT30288144	Prunus avium	Triticum aestivum	37.34	24.32	90	90	forward
CNT30224124	Prunus avium	Hordeum vulgare	54.77	44.44	88.64	132	forward
CNT30386294	Prunus avium	Triticum turgidum	37.34	24.46	90	90	forward
CNT30562819	Prunus avium	Actinidia chinensis	34.85	16.67	91.67	84	forward
CNT30590647	Prunus avium	Musa acuminata	31.95	24.68	88.31	77	forward
CNT30509848	Prunus avium	Solanum lycopersicum	53.53	56.09	90.7	129	forward
CNT30658093	Prunus avium	Triticum dicoccoides	37.34	20.59	90	90	forward
CNT30450104	Prunus avium	Saccharum spontaneum	29.46	17.03	88.73	71	forward
CNT30608684	Prunus avium	Gossypium raimondii	53.11	30.4	89.06	128	forward
CNT30218533	Prunus avium	Kalanchoe fedtschenkoi	23.65	10.96	87.72	57	forward
CNT3067093	Prunus avium	Leersia perrieri	34.85	18.79	90.48	84	forward
CNT30646927	Prunus avium	Rosa chinensis	28.63	20.54	97.1	69	forward
CNT30625732	Prunus avium	Daucus carota	76.76	86.45	87.57	185	forward
CNT30689637	Prunus avium	Triticum urartu	52.28	12.91	88.89	126	forward
CNT30338600	Prunus avium	Eragrostis tef	54.77	27.5	89.39	132	forward
CNT30480842	Prunus avium	Arabidopsis halleri	34.85	17.25	91.67	84	forward
CNT30368333	Prunus avium	Sorghum bicolor	79.25	71	90.05	191	forward
CNT30483063	Prunus avium	Chara braunii	29.46	31.42	85.92	71	forward
CNT30570869	Prunus avium	Vitis vinifera	54.77	39.64	90.15	132	forward
CNT30644460	Prunus avium	Cannabis sativa	46.89	37.79	91.15	113	forward
CNT30323623	Prunus avium	Asparagus officinalis	32.78	25.32	88.61	79	forward
CNT30120727	Prunus avium	Citrus clementina	53.53	23.45	91.47	129	forward
CNT30101083	Prunus avium	Oryza rufipogon	52.28	23.6	88.1	126	forward
CNT30116334	Prunus avium	Oryza nivara	52.28	20.66	88.89	126	forward
CNT30594390	Prunus avium	Eragrostis curvula	52.28	44.37	89.68	126	forward
CNT30726347	Prunus avium	Lupinus angustifolius	53.53	27.04	87.6	129	forward

Expression of CNT30704438

Peptides detected in this lncRNA

>peptide 1 (40 aa)
PASKPPVVESIMRMAQSAWEVPVIMFLIKSRCPGASITVQ*

>peptide 2 (77 aa)
GFKTTSSGVNNEDGTISLGGASNHVLDKVTMSRSINNSAVVLGDQVTSGSRLTRVDMANDHNVDVELLFTHYRISER*

Sequence

>CNT30704438
CCGGCTTCAAAACCACCAGTAGTGGAGTCAATAATGAGGATGGCACAATCAGCCTGGGAGGTGCCAGTAATCATGTTCTTGATAAAGTCACGATGTCCAG
GAGCATCAATAACAGTGCAGTAGTACTTGGTGATCAAGTGACCAGTGGTAGTCGACTTACCAGAGTCGACATGGCCAATGACCACAATGTTGATGTGGAA
CTTCTCTTTACCCATTACAGGATTTCAGAAAGATAACTGAA